Detailed information on CNT30185681


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30297106Secale cerealeTriticum aestivum34.0823.0789.26242reverse complement
CNT30439186Secale cerealeAegilops tauschii34.0818.2289.26242forward
CNT30721707Secale cerealeTriticum spelta34.0817.1989.26242forward

Expression of CNT30185681

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MTRLICHSHFSHFSFLFIVKTVGFSYCWLHSSGYTVFLESSVNIQVLISNGVLNLFSLTRRNFRHVCNWTNGV*

>peptide 2 (70 aa)
LILPRCNHDQTNLSFTLLTFFILIYCQNCWLFLLLAPFIRIHSFFRKFCKYPSIDLKWCTEFVFIDSQKL*

>peptide 3 (70 aa)
MRSTWRGPGWAAQLRGPGWCSEDQIGSGGGQARAAVIKLGAAATKLGKDDGEETGEGGEGGGGRRRRWPD*

>peptide 4 (52 aa)
MTGKRLAKEEKEVEGGGGGGRTSSWMRWRTEEVAGLAEEDEEEEPGGGRQRLL

>peptide 5 (33 aa)
MIILSKLDISRRTTTITIFSHALQVSQLIIALQ*

>peptide 6 (48 aa)
MPIVRCTWRKLIRIGSNEEYLARTRLGSTVERTRLVQRGPNWERRRPG*

Sequence

>CNT30185681
CTGATACTCCCTAGGTGTAATCATGACCAGACTAATCTGTCATTCACACTTCTCACATTTTTCATTCTTATTTATTGTCAAAACTGTTGGCTTTTCTTAC
TGTTGGCTCCATTCATCAGGATACACAGTTTTTTTAGAAAGTTCTGTAAATATCCAAGTATTGATCTCAAATGGTGTACTGAATTTGTTTTCATTGACTC
GCAGAAACTTTAGGCATGTTTGCAATTGGACAAATGGCGTATAACAATGATTATCCTCTCTAAATTGGACATCAGCAGGAGGACAACAACAATAACAATA
TTTTCTCATGCATTACAGGTTTCCCAATTGATCATTGCACTCCAGTAATTTCTTCTGATGCCAATTGTGAGGTGCACCTGGCGAAAACTGATAAGAATTG
GGAGCAATGAGGAGTACCTGGCGAGGACCAGGCTGGGCAGCACAGTTGAGAGGACCAGGTTGGTGCAGCGAGGACCAAATTGGGAGCGGCGGCGGCCAGG
CTAGGGCGGCGGTGATCAAATTGGGAGCGGCGGCGACCAAACTGGGCAAGGATGACGGGGAAGAGACTGGCGAAGGAGGAGAAGGAGGTGGAGGGCGGAG
GAGGAGGTGGCCGGACTAGCAGCTGGATGAGGTGGAGGACGGAGGAGGTGGCTGGCCTGGCGGAGGAAGACGAGGAGGAGGAGCCGGGCGGAGGAAGACA
ACGACTCTTG