Detailed information on CNT30185545


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690610Secale cerealeOryza sativa8019.6684.15164forward
CNT30454576Secale cerealeSaccharum spontaneum42.9314.3186.3688reverse complement
CNT30595519Secale cerealeOryza meridionalis8080.3983.54164forward
CNT30369233Secale cerealeOryza glumipatula8053.7783.54164forward
CNT3099654Secale cerealeOryza rufipogon8038.584.15164forward
CNT30574824Secale cerealeOryza barthii8078.4783.54164forward
CNT30497582Secale cerealeDigitaria exilis37.0736.3686.8476forward
CNT30603436Secale cerealeOryza punctata70.2456.9284.03144forward
CNT30550503Secale cerealeOryza brachyantha30.2413.3688.7162forward

Expression of CNT30185545

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MRTLILFVCPASLRAQPPASRTTFSAFRRTSVRGLLPIGTQGE

Sequence

>CNT30185545
CTTACTTCATAATGGATCATACTGATTATGAGATCTGGTCGTGCATCTACAGTTCCTTTTGACAACCAGAAAACATGAGGACCTTGATCCTTTTTGTGTG
CCCTGCTAGCCTCAGGGCACAGCCTCCTGCCTCGAGAACGACATTTTCTGCTTTTAGAAGGACGTCAGTCCGAGGACTCCTACCGATTGGCACACAAGGA
GAATC