Detailed information on CNT30185413


BLAST search results

BLAST vs Swiss-Prot:
sp|Q95H61|RR4_WHEAT, E-value = 1e-89

BLAST vs NONCODE:
NONORUT000576, E-value = 3e-103

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30292655Secale cerealeTriticum aestivum88.0983.4397.691687forward
CNT30626868Secale cerealeDaucus carota13.1148.8389.24251forward
CNT30362312Secale cerealeSorghum bicolor11.4970.5191.36220reverse complement
CNT30150577Secale cerealeBrachypodium distachyon3.3927.0898.4665reverse complement
CNT30116859Secale cerealeOryza nivara21.7299.7694.95416forward

Expression of CNT30185413

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MGKYELMVMVLGRSSWGKGEGEENSMNLSFFSLSSSLTRVIFYN*

>peptide 2 (31 aa)
MKTQFLFFLKTNMILLLFPRIEFFSSDYFRI*

>peptide 3 (46 aa)
MVEAIPNRKRILSKRISSNCSKTWPVDLFAFPAICTYLSNCRSVRP*

>peptide 4 (36 aa)
MQTEFKGFFILLCNKKNSSIFFFFSCGKTQIKTFIL*

>peptide 5 (72 aa)
MLYSKSICFKWIREIWIFRSAQIVSFHSAWTRIDMKYLTKTGFHSTFLFLNNNLCYQLFRLFKVINCLIPYF*

>peptide 6 (29 aa)
MDKRDMDFPLSSNCILSFCLDTNRYEIFD*

Sequence

>CNT30185413
CCATCTCTATAATAAGTAAATGCCTTTTTTTCTCCTGAGGTTGTCGGAATTATTCGCAATAAAATATTGCCTACAATTGAGGAGGTCTTATCAATGAAAT
TTCCATTTACACGGGATCTAGGCATAATTCCCAACCCATTCTATATAGAATTGTTTTCATTCCTTCACAAAATAACATAAAAACAAACACATTCGATTCT
TATAATTATAAATAGATTGATCCATATGCTTTACTCTAAATCCATATGCTTTAAATGGATAAGAGAGATATGGATTTTCCGCTCAGCTCAAATTGTATCC
TTTCATTCTGCTTGGACACGAATAGATATGAAATATTTGACTAAGACTGGTTTTCATTCCACTTTCCTATTTCTGAACAACAACTTATGTTATCAACTAT
TTCGTCTTTTCAAAGTTATTAATTGTCTCATACCCTATTTTTGATTTCGATAGTATGGTGTAGCGTATCTTATGCAAACGGAATTCAAAGGTTTCTTTAT
TTTATTATGCAATAAGAAGAATTCTTCCATTTTCTTTTTCTTTAGTTGCGGGAAAACACAAATTAAAACTTTTATTTTATAGCGAGCGCAATTTCTAGTA
AAAAATCTTGTATCCTTCCACTTAGATCAAAAGGAATTTTTCCAATAGAACTATGGAACCCCCGAGTGGTTGCGGTTGTACCTGTACTGCAGGAATAAGA
AAACTCGCTATTCACTCAGTTTATTTTCCATAATAAGTTATGTAGGAGAGATGGTCGAGCGGTTCAAGGCGTAGCATTGGAACTGCTATGTAGACTTTTG
TTTACCGAGTGTTCGAATCCCTCTCTTTCCGTTTTTCTTAATTCATCAATGTTAAGGATCACAATGTATCAAATCAAATAACAATTTTTTCCAGCAATAA
TATAATAGCTTATATTATCTTATTTTGATTTAATAGAAATTAGAAATTCTCTATAGCAAATTACTGTGGTATGTAAAATACACATAGAGGAAAAAAGAAA
AAAGGATCCTAATCCTAGGGTTAATCAATTTTAGCTAGTTGATGGGAAAATACGAATTAATGGTAATGGTCTTAGGGCGATCTAGTTGGGGGAAAGGGGA
AGGGGAAGAAAATTCTATGAACCTTTCATTTTTTTCGTTAAGTTCAAGTCTGACGAGAGTAATATTCTACAACTAACAACTCATTTATTTTTAGACCGAC
CCACTTCCTATCTAGGATTTTATTTACTAGTCTTTATATTCAAACGTGTCAATCGCCAAATGCTTTGGCAATTTCCCCTGGTCCGATGAAGCAATATAAT
TTTGAACCAGACCTTTTGATCTTTGGTTATCTTTCGTAGTAATAATATCTCGGGGTTTGCAACAAAAACTTGGTATATTGACTATACGACCATTAACTAA
AATATGTCTATGGTTGACTAATTGGCAGGCCCCAGGAATGGTTGAAGCCATACCCAATCGAAAAAGGATATTATCCAAACGCATTTCAAGTAATTGTAGT
AAAACCTGGCCTGTTGACCTTTTTGCTTTTCCAGCGATATGTACATATCTAAGTAATTGTCGTTCTGTCAGACCATAATGAAAACGCAATTTCTGTTTTT
CTTGAAGACGAATATGATATTGCTCCTTTTTCCCAGAATTGAATTTTTTTCTTCAGATTACTTCCGGATTTAGGTGTTTTTCTAGTGAGTCCTGGTAAAG
CTCCTAGACGGCGTATTTTTTTAAACGAGGTCCTCGATAACGGGACATGAAGACTCCTTTTTTATTTTATTGAAATTTCATTTTACACAATTAATTTCAT
TGTATTTACATTACAGAATACATCGAAATTAAAACTGAATTAAACTACAGGATAAACAGAGTAAAATCAACTAAAGTACCAAAAAAATGGAATTTCATCA
AAATCCTTATTTTTT