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Detailed information on CNT30185318


BLAST search results

BLAST vs Swiss-Prot:
sp|P55308|CATA2_HORVU, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520085Secale cerealeSetaria italica33.6726.6988.72461forward
CNT30616919Secale cerealeSesamum indicum8.9137.7782.79122forward
CNT30592095Secale cerealeMusa acuminata10.5248.8186.11144forward
CNT30552865Secale cerealeOryza glaberrima12.1361.2590.36166forward
CNT30663726Secale cerealeTriticum dicoccoides32.0753.0883.37439forward
CNT30575497Secale cerealeOryza barthii19.2821.0587.12264forward

Expression of CNT30185318

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MIHSSWHGLLLLVHDIAQSLHTERSIITCLASR*

>peptide 2 (98 aa)
MHASIIVRSLNELLVTLERKSIQMTRSSWLTLGWASASAKRRTNLSCRSGAQLRYLSPGCTKSFSFLILVFSLFPTTGRVGTGKLAGSACRSGAWRDG*

>peptide 3 (45 aa)
MLGFTLSRFATFIPQDLSHCIHIQLVLNKQRKFRVNPPMDSCMHQ*

Sequence

>CNT30185318
TAGTAACTTATTAGTAGCACAGTAGCTAATCGACCACATGATCCACAGTAGCTGGCATGGTCTCTTATTGCTGGTCCATGATATAGCACAAAGTTTACAC
ACAGAACGGTCCATCATCACATGCTTGGCTTCACGTTGAGCCGGTTCGCCACCTTCATCCCGCAAGACTTGTCACACTGCATCCATATCCAGTTAGTGCT
CAACAAACAAAGAAAATTCAGGGTAAATCCTCCCATGGATTCATGCATGCATCAATAATTGTTCGGTCACTTAATGAATTACTAGTTACCTTGGAGAGGA
AGTCGATCCAGATGACGCGTAGCTCGTGGCTGACCTTGGGGTGGGCGAGCGCGTCGGCGAAGCGGCGCACGAACCTGTCCTGCCGGTCGGGCGCCCAGCT
GCGGTACCTCTCCCCGGGCTGCACGAAGTCGTTCTCCTTCTTGATCCTCGTCTTCTCCCTTTTTCCGACGACGGGTCGCGTTGGCACGGGGAAGCTGGCC
GGCTCGGCGTGCCGGAGCGGCGCGTGGCGGGACGGGTAGTAGTCCACCTCCTCGTCCCGGTGCATGAAGTTCATGGCGCCGTCGTAGTGGTTGTTCTTGA
AGCCGCACTTGGGCGCGTTGACGGGGAGCATCAGGTAGTTTGGCCCCAGGCGGTAGCGCTGCGTGTCGGCGTAGGCGAACACCCTGCACTGCAGCATCTT
GTCGTCGGAGTAGTAGATCCCGGGCACGACGAGGCCGGGGCCGAAGGCCAGCTGCTCGTTCTCGTTGAAGAAGTTATCTACGTTTCGGTCGAGCACGAGG
CGCCCCACGGGCTGGAGGGGGACGAGGTCCTCGGGCCACGTTTTGGTGTCGTCGAGCGGGTCGAAGTCAAAGCGGTCCTCGTTGTCGGGGTCGATGACCT
GCACGAAGAGCTTCCACTCGGGGAAGTTGCCGGCGTCGATGGAGTCGTAGAGGTCCTGGGTGGCGTGGCTGTGGTTCTTGCCACCTACGAGCGTGGCCTC
GTCGTCCATGAGGCAACTGACGCCGCAGGTGGGGCGCCAGTGGAACTTGATGTAGTGGGACTTGCCGGCGCGGGTGAGGCCGGTGACGTCGTGGGTGCAC
TCGAAGAAGCCCTTGGCGGAGGCGCCCCGCGCGTGGACGACGCGCTCCGGGATGCGCTCGCGGGCGAAGTGGGCGATCTTCTCGAGCAGGTGGTAGTCCT
CCAGCAGGATCGGGCCACGCGGGCCGACGGTGAGCGCCTCGTTGTCGTTCCACACCGGCTGGCCGGCGTTCGTCGTCGTCGTCTTGGTGTCGAAGCTGCT
CGACGGCCGGAACTGCACGCCACCCACACGCACACCCACAGAGCGCCATGTTAATGAATGAATTATAAG