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Detailed information on CNT30185311


BLAST search results

BLAST vs Swiss-Prot:
sp|B8AME2|CATA3_ORYSI, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692523Secale cerealeOryza sativa23.7428.2687.13334forward
CNT30678563Secale cerealeSetaria viridis11.375.7186.79159forward
CNT3020926Secale cerealeCitrullus lanatus18.9838.3182.4267forward
CNT30304171Secale cerealeTriticum aestivum24.2447.5698.24341forward
CNT30223857Secale cerealeHordeum vulgare10.3157.5490.34145forward
CNT30243876Secale cerealeAvena sativa16.8431.4795.36237forward
CNT30139766Secale cerealeLolium perenne34.0497.7693.74479forward
CNT302263Secale cerealeZea mays19.6924.884.84277forward
CNT30228927Secale cerealeAnanas comosus1589.0386.73211forward
CNT30685932Secale cerealeTriticum urartu13.5754.8985.86191forward
CNT30347744Secale cerealeEragrostis tef27.8625.0388.27392forward
CNT30369978Secale cerealeOryza glumipatula19.6936.8887.36277forward
CNT3037432Secale cerealeCucumis melo11.841.482.53166forward

Expression of CNT30185311

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MLGFTLSRFATFIPQDLSHCIHIQLVLNKQRKFRVNPPMDSCMHQ*

>peptide 2 (71 aa)
MVSGEPRSWMTVEKRTITGVRAPGARRKSAQVRPVTSWVHSKKPLAEAPRAWTTRSGMRSRAKWAIFSSRW*

>peptide 3 (33 aa)
MIHSSWHGLLLLVHDIAQSLHTERSIITCLASR*

>peptide 4 (98 aa)
MHASIIVRSLNELLVTLERKSIQMTRSSWLTLGWASASAKRRTNLSCRSGAQLRYLSPGCTKSFSFLILVFSLFPTTGRVGTGKLAGSACRSGAWRDG*

Sequence

>CNT30185311
TAGTAACTTATTAGTAGCACAGTAGCTAATCGACCACATGATCCACAGTAGCTGGCATGGTCTCTTATTGCTGGTCCATGATATAGCACAAAGTTTACAC
ACAGAACGGTCCATCATCACATGCTTGGCTTCACGTTGAGCCGGTTCGCCACCTTCATCCCGCAAGACTTGTCACACTGCATCCATATCCAGTTAGTGCT
CAACAAACAAAGAAAATTCAGGGTAAATCCTCCCATGGATTCATGCATGCATCAATAATTGTTCGGTCACTTAATGAATTACTAGTTACCTTGGAGAGGA
AGTCGATCCAGATGACGCGTAGCTCGTGGCTGACCTTGGGGTGGGCGAGCGCGTCGGCGAAGCGGCGCACGAACCTGTCCTGCCGGTCGGGCGCCCAGCT
GCGGTACCTCTCCCCGGGCTGCACGAAGTCGTTCTCCTTCTTGATCCTCGTCTTCTCCCTTTTTCCGACGACGGGTCGCGTTGGCACGGGGAAGCTGGCC
GGCTCGGCGTGCCGGAGCGGCGCGTGGCGGGACGGGTAGTAGTCCACCTCCTCGTCCCGGTGCATGAAGTTCATGGCGCCGTCGTAGTGGTTGTTCTTGA
AGCCGCACTTGGGCGCGTTGACGGGGAGCATCAGGTAGTTTGGCCCCAGGCGGTAGCGCTGCGTGTCGGCGTAGGCGAACACCCTGCACTGCAGCATCTT
GTCGTCGGAGTAGTAGATCCCGGGCACGACGAGGCCGGGGCCGAAGGCCAGCTGCTCGTTCTCGTTGAAGAAGTTATCTACGTTTCGGTCGAGCACGAGG
CGCCCCACGGGCTGGAGGGGGACGAGGTCCTCGGGCCACGTTTTGGTGTCGTCGAGCGGGTCGAAGTCAAAGCGGTCCTGGGTGGCGTGGCTGTGGTTCT
TGCCACCTACGAGCGTGGCCTCGTCGTCCATGAGGCAACTGACGCCGCAGGTGGGGCGCCAGTGGAACTTGATGTAGTGGGACTTGCCGGCGCGGGTGAC
GAAGACGGGGAAGTTGTTGCCAAGGAGGTCCCAGTTGCCCTCGCGCGTGTAGAACTTGACGGCGAAGCCGCGCGGGTCGCGGATGGTCTCGGGGGAGCCG
CGCTCGTGGATGACGGTGGAGAAGCGGACGATCACCGGCGTTCGCGCCCCGGGCGCGCGGAGGAAGTCGGCGCAGGTGAGGCCGGTGACGTCGTGGGTGC
ACTCGAAGAAGCCCTTGGCGGAGGCGCCCCGCGCGTGGACGACGCGCTCCGGGATGCGCTCGCGGGCGAAGTGGGCGATCTTCTCGAGCAGGTGGTAGTC
CTCCAGCAGGATCGGGCCACGCGGGCCGACGGTGAGCGCCTCGTTGTCGTTCCACACCGGCTGGCCGGCGTTCGTCGTCGTCGTCTTGGTGTCGAAGCTG
CTCGACG