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Detailed information on CNT30184954


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004263, E-value = 3e-122

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30116966Secale cerealeOryza nivara55.258.5290.49305forward

Expression of CNT30184954

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MLRDSVLIIQFLFWMQFKLVFGYKSPECIFFLNMLLRGKGFNPL*

Sequence

>CNT30184954
CCGCTTTCTAGATGATCCTTATAGAGTAGGAGATAGAAATTCTATCTAAATCCATCTAATCTACTTACTTCGTTCCCTAATTTCATTCAAGAGATCCTGA
GGAAAAGAATTGGGTTTCCACCGAGCTGAAACAATATGCGGATGGTTCTAGTAAACCAAAACTATCGTTTTTTAGCTATTTGGCTTCCTTATTCCTTATT
TTAACAAAAGAAGATTTAGTTACGATTGGAAATCAACTTTTTTGTATCTTCATCCATAGATCCTTTACTCATATTTTCAAAATTGGAATACTTAATCCAA
TGCAAAATTATGCTTCGCGACTCTGTACTCATAATCCAATTTTTATTTTGGATGCAATTTAAATTAGTCTTTGGATACAAATCGCCAGAATGTATATTCT
TCCTCAATATGCTATTGAGAGGAAAAGGATTTAATCCTTTATAAGAACTAAATTTTCATCGGAATATAAAAATAAAAAACTTAAGGATGCCTTAAGTATA
TCATTTCAAATTCAGTTATTAATAGAACGAATCACACTTTTACCACTAAACT