Detailed information on CNT30184864


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677703Secale cerealeSetaria viridis62.35100.8495.57361forward
CNT30505424Secale cerealeNicotiana attenuata38.6948.0796.88224forward
CNT30508435Secale cerealeSolanum lycopersicum21.246.484.55123reverse complement
CNT30203049Secale cerealeHelianthus annuus36.6180.397.17212forward
CNT30364089Secale cerealeSorghum bicolor64.7782.691.73375forward
CNT30595740Secale cerealeOryza meridionalis23.4952.9296.32136reverse complement
CNT30574572Secale cerealeVitis vinifera39.93.4397.4231forward
CNT3099908Secale cerealeOryza rufipogon47.84101.0997.47277forward
CNT30335929Secale cerealeCynara cardunculus17.4427.3798.02101forward

Expression of CNT30184864

Peptides detected in this lncRNA

>peptide 1 (55 aa)
NHALDGCPGIEKEGRFQRRKAMGRDFSVIHGSPIGKPYPSSVASLRSLDFSNLAN*

Sequence

>CNT30184864
AAATCATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGAGATTTTTCTGTGATCCATGGATCTCCG
ATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTGAGTAGCTAAAGGAAGGAAAATCA
ACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGAACAAGGGTTTTCATCAAAAGAAATCCGAAGCGGTTTCATTCGATTTGTTGTGGATTGGATGATG
GAAAAACCAGCAAGCAGCAAGCGTAGTTAGAAAAGTTGCCGTAGCGCGCCCTACGGAGTTGTACAAAGTCAGCAACCGTTTTGGGGCGCAAGCATAGGCA
ACACAGGACTGATGACGGGGTGGGGCGCGCAGTGAACTGGTTTTCTAAAAAGATTGGAAGATCCGGCCAAAGAAGGTGATAGCCCTGTTCATTCGTTCCC
ATGGTTCGATCCTTCCCAGTAAAACGCGGCGTGTTTGAATGATGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTA