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Detailed information on CNT30184716


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30390922Secale cerealeTriticum turgidum11.1925.9410076reverse complement

Expression of CNT30184716

Peptides detected in this lncRNA

>peptide 1 (72 aa)
SEQNPVRSFSQTSSTGSDKSKPVLEIGSHRGGEEQTPWPVPSRPPASPPAARRPASSSPPRRRGSRRRPPAA*

>peptide 2 (39 aa)
MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKIL*

>peptide 3 (78 aa)
LSKIRFVPFPKRVVLVVTSRSQFWKLEVTEEERSRRHGPYQADRPQVHRRQGAPQAARHQGGEEVGADHRRREDPVSS*

Sequence

>CNT30184716
ATCTGAGCAAAATCCGGTTCGTTCCTTTTCCCAAACGAGTAGTACTGGTAGTGACAAGTCGAAGCCAGTTTTGGAAATTGGAAGTCACCGAGGAGGAGAG
GAGCAGACGCCATGGCCCGTACCAAGCAGACCGCCCGCAAGTCCACCGGCGGCAAGGCGCCCCGCAAGCAGCTCGCCACCAAGGCGGCGAGGAAGTCGGC
GCCGACCACCGGCGGCGTGAAGATCCTGTAAGCTCGTAGTGAGTGAAAGGCAACTTTTGTTCCGCTGTAAAAAAAACGTGGAATTGATGCTTTGAGATGT
CAAGGCTCATGAAGTGGAGACTGGAGAGAAGATGAAAGCAAGTCAAGTTGGTTTGGACCGTTCGGTTTCATGTTGGAGATGTTGAAGTTGAACCTATTTG
TGTGATGAGATGTTGAACTTATTTGTGTGTTGAACCTATTTATCATTTGTGTGATGAACCTATTTGCGGTCTTCGAACTTATTTGTGTGTCGAACTATGT
GTGTGCTGAAATATTTCCAAGTGCTGAAACTTGACATGTCTATGTGATGAAATTCTGAACTTATGTTCAAGTGCTGAAACTTGACATGTTTATCAGTTTA
TGTGCTGAAATGCTGGAATATGTGTGTTGATATATATATGTATATGTTCAAATGCTGTAATATACATGCTGAAATGTGG