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Detailed information on CNT30184672


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697144Secale cerealeOryza sativa42.1217.1293.53139forward
CNT30677012Secale cerealeSetaria viridis41.5219.4386.86137forward
CNT30524410Secale cerealeSetaria italica41.5217.5287.59137forward
CNT30297243Secale cerealeTriticum aestivum57.8864.0995.81191forward
CNT30223766Secale cerealeHordeum vulgare57.2738.9795.77189forward
CNT30390869Secale cerealeTriticum turgidum96.9768.0991.56320forward
CNT30555350Secale cerealeOryza glaberrima27.2715.7996.6790forward
CNT30438927Secale cerealeAegilops tauschii97.2779.6593.46321forward
CNT30249379Secale cerealeAvena sativa43.9436.5297.93145forward
CNT30662940Secale cerealeTriticum dicoccoides56.0647.3196.22185forward
CNT30465769Secale cerealeSaccharum spontaneum43.6425.0488.19144forward
CNT30135675Secale cerealeLolium perenne43.0337.4796.48142forward
CNT30721254Secale cerealeTriticum spelta56.0633.2195.68185forward
CNT30353507Secale cerealeEragrostis tef31.528.1493.27104forward
CNT30365046Secale cerealeSorghum bicolor43.6414.9587.5144forward
CNT30597113Secale cerealeOryza meridionalis27.8812.2796.7492forward
CNT30371232Secale cerealeOryza glumipatula42.1213.1593.53139forward
CNT30322408Secale cerealeAsparagus officinalis42.121685.61139forward
CNT30151052Secale cerealeBrachypodium distachyon31.8245.2697.14105forward
CNT30104243Secale cerealeOryza rufipogon42.1225.7493.53139forward
CNT30578126Secale cerealeOryza barthii42.1216.5193.53139forward
CNT30498372Secale cerealeDigitaria exilis31.2121.6889.32103forward
CNT30117952Secale cerealeOryza nivara42.1211.1893.53139forward
CNT3039554Secale cerealeMarchantia polymorpha39.735.7984.73131forward

Expression of CNT30184672

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PIRNQNGHVSSALDNLHVRHIRTLILFPR*

>peptide 2 (43 aa)
PSEIRTVMFLLPLIIYTYGTFVLSYFSPGKIHTAHDAASRACS*

>peptide 3 (74 aa)
MMLHRAHAADHQQPTAADGQSTASSQAWMKKPSMENMASRPFLISFTLSSAAWSGSVARPSGSNGPPGWSLSSNS

Sequence

>CNT30184672
TCCCATCAGAAATCAGAACGGTCATGTTTCTTCTGCCCTTGATAATTTACACGTACGGCACATTCGTACTCTCATACTTTTCCCCCGGTAAAATTCACAC
AGCACATGATGCTGCATCGCGCGCATGCAGCTGATCATCAACAGCCGACGGCGGCGGACGGGCAATCAACGGCCAGCTCACAGGCCTGGATGAAGAAGCC
CAGCATGGAGAACATGGCCAGCCGCCCGTTCTTGATCTCCTTCACCTTGAGCAGCGCCGCCTGGTCGGGGTCGGTGGCGAGGCCGAGCGGGTCGAATGGG
CCACCGGGGTGGAGCTTGTCATCAAATTCC