Detailed information on CNT30184652


BLAST search results

BLAST vs Swiss-Prot:
sp|P06353|H33_HORVU, E-value = 2e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596369Secale cerealeOryza meridionalis31.3637.9996.23106forward

Expression of CNT30184652

Peptides detected in this lncRNA

>peptide 1 (41 aa)
QHQQAEDTRQERLLPSIVTGGDRKPRRAPPGCGGRAGCPWA*

>peptide 2 (98 aa)
NTNRQKTPDRNDYYQVLSPAATENLGALPPDAAGELDVLGHDGDALGVDGAQANLGALPADAAGELDVLGHDGDALGVDGAQVGVLEQPHQIGIGGLL*

>peptide 3 (31 aa)
MRRASWMSLGMMVTRLAWMAHRLVSSNSPTK*

Sequence

>CNT30184652
CAACACCAACAGGCAGAAGACACCAGACAGGAACGACTACTACCAAGTATTGTCACCGGCGGCGACCGAAAACCTAGGCGCGCTCCCCCCGGATGCGGCG
GGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCACAGGCAAACCTAGGCGCGCTCCCCGCGGATGCGGCGGGCGAGCTGG
ATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGCCCCACCAAATAGGCATCGGCGGCCTCCTGTAGGG
CGGACACAGCGGAGGACTGGAACCTGAGGTCGGTCTTG