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Detailed information on CNT30184327


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691571Secale cerealeOryza sativa61.55.2387.02131forward
CNT30523459Secale cerealeSetaria italica21.62.3991.346forward
CNT30304673Secale cerealeTriticum aestivum75.5913.7495.65161forward
CNT30226134Secale cerealeHordeum vulgare75.5913.6393.17161forward
CNT30398990Secale cerealeTriticum turgidum59.6229.6796.85127forward
CNT30588080Secale cerealeMusa acuminata24.416.4888.4652forward
CNT30552492Secale cerealeOryza glaberrima61.56.0686.26131forward
CNT30443932Secale cerealeAegilops tauschii75.5911.3695.03161forward
CNT30253313Secale cerealeAvena sativa27.71.3394.9259forward
CNT30669134Secale cerealeTriticum dicoccoides75.5917.6195.65161forward
CNT30140682Secale cerealeLolium perenne55.874.293.28119forward
CNT309471Secale cerealeZea mays66.6710.3584.51142forward
CNT30688313Secale cerealeTriticum urartu75.5917.1195.65161forward
CNT30344621Secale cerealeEragrostis tef23.945.290.251forward
CNT30595788Secale cerealeOryza meridionalis56.349.9185.83120forward
CNT30369516Secale cerealeOryza glumipatula61.55.2886.26131forward
CNT30110154Secale cerealeOryza longistaminata30.052.1892.1964reverse complement
CNT30329990Secale cerealeDioscorea rotundata22.072.7393.6247forward
CNT30100370Secale cerealeOryza rufipogon24.414.9194.2352forward
CNT30575434Secale cerealeOryza barthii61.54.2586.26131forward
CNT30583813Secale cerealeEchinochloa crusgalli28.1718.1891.6760forward
CNT30495872Secale cerealeDigitaria exilis66.28.4184.4141forward
CNT30594786Secale cerealeEragrostis curvula23.943.9790.251forward
CNT30603626Secale cerealeOryza punctata60.095.0987.5128forward
CNT30556231Secale cerealePanicum hallii66.676.7185.92142forward

Expression of CNT30184327

Peptides detected in this lncRNA

>peptide 1 (51 aa)
VIACGGTKHEATTALLARKLQNIWVIIVTFLQVVQLLSQACCLCLPDRNVK*

Sequence

>CNT30184327
AGTTATTGCATGTGGTGGCACCAAGCATGAGGCGACAACTGCATTACTTGCAAGGAAGTTACAAAATATATGGGTCATCATCGTGACTTTCTTGCAAGTT
GTGCAGTTGCTGTCTCAAGCTTGCTGCCTCTGTTTGCCAGACCGTAATGTGAAATAGGTGATTCCAACTGTCTAGGTTTTTCTACAAACCCAGGAGAAAC
AAGTATCACGAAG