Detailed information on CNT30183781


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697771Secale cerealeOryza sativa9.6620.5693.9466forward
CNT30295231Secale cerealeTriticum aestivum77.16100.3897.34527forward
CNT30391100Secale cerealeTriticum turgidum78.6288.3297.39537forward
CNT30438855Secale cerealeAegilops tauschii69.6988.4897.48476forward
CNT30258377Secale cerealeAvena sativa71.371.4183.37487forward
CNT30103845Secale cerealeOryza rufipogon18.328.0384125forward
CNT30578311Secale cerealeOryza barthii17.8627.2382.79122forward

Expression of CNT30183781

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLPLCKKRLKQSTSSMFFKSQLSSFPLEASHMPASDQDPSEAYPSRP*

>peptide 2 (54 aa)
MFTGGNTNTEECTPKISSLFITQAIQMVPVFHLSLFSWNLISSSSYPIIIYSNQ*

Sequence

>CNT30183781
AAAAGATACAAGTTTGCTCAGGAGAACTACTGACCATTAACAAAATACAAATACAGATATAGATACAAATACACCGTGTTTGTTCAACAAAAGCATTCTT
CCAGGTACAAAACCCAAACCTCTGAACACAAAGTGTAACATATAACATACAGGCAGTGTTTATGTTCACGGGTGGCAACACCAACACGGAGGAGTGTACA
CCCAAAATATCTAGTCTTTTTATCACACAAGCTATACAAATGGTACCAGTCTTCCACCTCTCACTCTTCAGCTGGAACCTAATCTCATCCTCATCCTACC
CCATCATAATATATAGCAACCAGTAAATTAAGTCTACCTCGGCTAGAGATATTGCTCACCAAAATTGCCCTGGTACCAAAAGAATATTAACTGAAACAAC
CAATAACCCAAATCAATCTACAACTTGAAAGATACCTTTGGGATCCTCATGCTCCCTCTGTGTAAAAAAAGACTGAAACAATCGACATCATCTATGTTCT
TCAAAAGCCAACTCAGTAGTTTCCCATTGGAGGCATCCCATATGCCGGCATCGGACCAGGACCCATCGGAGGCATACCCATCCCGCCCATAGGAGGCATA
CCCATCCCACCCATCGGAGGTGGACCCCCCATACCAGGCGGAGCAGGCAAGGCGAGAGGGAGCAATTGAGCGTACATGTTCTG