CANTATAdb - search

Detailed information on CNT30183751

BLAST search results

BLAST vs Swiss-Prot:
sp|A5H452|PER70_MAIZE, E-value = 7e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30673938	Secale cereale	Setaria viridis	11.95	43.75	82.86	105	forward
CNT30552770	Secale cereale	Oryza glaberrima	13.31	35.67	86.32	117	forward
CNT30688208	Secale cereale	Triticum urartu	11.95	27.49	84.76	105	forward
CNT30352142	Secale cereale	Eragrostis tef	19.68	22.97	83.24	173	forward
CNT30368355	Secale cereale	Sorghum bicolor	13.54	21.14	82.35	119	forward
CNT30150580	Secale cereale	Brachypodium distachyon	24	29.31	82.46	211	forward

Expression of CNT30183751

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MFTSTHYYSLSSDPNAFIFFYGGSTILLLHKIVNQLDINIFS*

>peptide 2 (43 aa)
MDLTTLELEGYSSMNPSPQALSEPNGSYSAMQHVYMMRRRISR*

>peptide 3 (50 aa)
MFPILIIAVTKSEAKSAGLATYWRTSASWEPPLKSTWSELSRPRLATRLR*

>peptide 4 (54 aa)
KKIISSHLFSLTVLSQISLQTCIKNHYSSACIRRRDLHDEAWILQPWSWRVTQV*

Sequence

>CNT30183751
AAAAAAAATTATCTCTTCACATTTGTTTTCTCTCACAGTTTTGTCGCAAATCTCACTCCAAACTTGCATAAAAAACCATTATAGCAGTGCATGCATACGT
CGGAGAGACTTACATGATGAAGCATGGATCTTACAACCCTGGAGTTGGAGGGTTACTCAAGTATGAATCCCAGCCCCCAGGCATTATCTGAACCAAACGG
CTCGTATTCCGCCATGCAACATGTATATATGATGAGACGACGGATCAGCCGTTGACGACCCTGCAGTTGCGCCTAATCTGGCCGGCGGTTCCTGTGAGCG
GCTTGATGTTCCCCATCTTGATCATCGCCGTCACGAAATCGGAGGCGAAAAGCGCCGGGTTAGCGACGTACTGGCGCACGAGCGCGTCCTGGGAGCCGCC
GTTGAAGAGCACCTGGTCGGAGTTGAGCAGGCCGCGCTTGGCGACCAGGTTGCGGTAGTAGGCGTTGTCGAAGAGGAGCTGCGTCTGCACGTCGAACGGT
GCCAGGTTCTTGTTGCCGTTGGGGGCCTTGTCGGGGCAGGAGACGACGCCAGGGCAGAGGAGCTCCACGTTCTTCTTGATCTCGTCGATCACCTCGTAGC
CCCGGACCGAATCCACGTTCGGAAAGGCTGTCTTCTCGCCCACGAAGCTACCCACGTCATCCAAGAGAATGGACCCGTCACAGCCCTACATATACATATA
ACATAATTCCACCATTAATCATGGCCTAATTAAGCATGTTCACTAGCACACATTACTACTCCCTCAGTAGTGATCCAAACGCTTTTATATTTTTTTACGG
AGGAAGTACTATACTACTACTGCATAAGATCGTAAATCAATTGGACATAAATATCTTTTCCTAACAGCTCATCTAATTT