CANTATAdb - search

Detailed information on CNT30183502

BLAST search results

BLAST vs Swiss-Prot:
sp|P48488|PP1_MEDSV, E-value = 2e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30670586	Secale cereale	Setaria viridis	14.21	38.5	85.71	77	forward

Expression of CNT30183502

Peptides detected in this lncRNA

>peptide 1 (83 aa)
NITESTFSIGNLHHMKKFLAPPVLKHFAMHSRVNKRNKKSTHKIPSHVSCSDLSRMAGQICIRPRKNNSMQVDIFNTLFGPPS*

>peptide 2 (57 aa)
MFPAPIFPEWQDRSASDHEKTTACRLTFSTRCSAHLHNKFWGGCSITITHFIPEGSA*

>peptide 3 (43 aa)
MSMLVNHLCSSWHQHCRTRHNSWVQRIWLRADALQRIHIHPPPP

Sequence

>CNT30183502
ATAACATAACAGAATCTACATTCAGCATTGGCAATCTCCACCACATGAAGAAGTTCCTGGCGCCTCCCGTGCTTAAACATTTTGCCATGCATAGCAGAGT
TAATAAAAGGAATAAGAAATCCACACACAAAATTCCCAGTCATGTTTCCTGCTCCGATCTTTCCAGAATGGCAGGACAGATCTGCATCAGACCACGAAAA
AACAACAGCATGCAGGTTGACATTTTCAACACGTTGTTCGGCCCACCTTCATAACAAGTTTTGGGGGGGGTGCTCCATCACAATAACTCATTTCATACCG
GAGGGGTCTGCCTAAATAATATTAATCTTTATCTTCCTAGGCGGTGTTCCAAGTTTTGAGTTGCCGGTTCCAGCTTTCCCTTTCTTATCAGAAGGTTTAA
GGATCTGGAATGAGCATGTTAGTGAATCATCTATGCTCATCATGGCACCAGCATTGTCGAACTCGCCACAATAGTTGGGTGCAGAGAATATGGTTACGAG
CTGACGCTTTGCAAAGAATTCATATCCATCCTCCACCACCTG