Detailed information on CNT30183480


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FLP9|GGAP2_ARATH, E-value = 2e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524037Secale cerealeSetaria italica44.6712.3283.08130forward
CNT30683749Secale cerealeTriticum urartu51.5523.8998150forward
CNT30367441Secale cerealeSorghum bicolor53.9520.2384.08157forward
CNT30582280Secale cerealeEchinochloa crusgalli53.9514.4882.8157forward
CNT30557237Secale cerealePanicum hallii44.6710.4383.08130forward

Expression of CNT30183480

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MKILLPESEMRTLKGTLFSWSQMQALVTTSAKSFSVFPLSKTRPLTGKFVSFDTFTPLFSAHLARGIFLVGAFSTGKGTDR*

>peptide 2 (54 aa)
RKNEDPSTGIRDEDVERNVVLLEPNASVGNHISQILQCVPSLKDQTSHREICQF*

Sequence

>CNT30183480
TGAGGAAAAATGAAGATCCTTCTACCGGAATCAGAGATGAGGACGTTGAAAGGAACGTTGTTCTCCTGGAGCCAAATGCAAGCGTTGGTAACCACATCAG
CCAAATCCTTCAGTGTGTTCCCTCTCTCAAAGACCAGACCTCTCACAGGGAAATTTGTCAGTTTTGACACCTTCACTCCACTCTTCAGCGCACACTTGGC
AAGGGGGATCTTCTTGGTAGGCGCCTTCTCAACAGGAAAAGGTACCGATAGGTAGGAGCTCATCATCCTGAGCAGGCTTCTTTGGGTCGGC