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Detailed information on CNT3018293


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT001310, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674625Zea maysSetaria viridis26.9992.9699.24264forward

Expression of CNT3018293

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MFQFARLSLACSWIQQAVQKVDLFGNLRIYAYFQLPEAFRRLLRPSSSLGA*

>peptide 2 (43 aa)
MLIFNSPKHFVACYALPRLWVPRYPPQAFPLLNLAINVKAMPS*

>peptide 3 (39 aa)
MLRGVENKHRSGDSQIGQPFELPAESMSRQETTWRTETS*

>peptide 4 (52 aa)
MGHVESRVNQQGPPCKAKYSWVTDSEVIFSLARWSLLIHTGFHVPHATRVRA*

Sequence

>CNT3018293
GCTTGCGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCC
AAATAGGTCAACCTTTTGAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAGAAAGCAAAA
GCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTTGTGCTGCTAGGCGAAGCGG
TTGAGTGCCGCACCCTAGATGGCTAAAGTCCAGTAGCCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGTGGAATCCCGTGTGAA
TCAGCAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGCGAAGTAATATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTC
CACGTGCCCCATGCTACTCGGGTCAGAGCGTAAGCTAGTGATGCTTTCGGCTACTGGACTTTAGCCATCTAGGGTGCGGCACTCAACCGCTTCGCCTAGC
AGCACAACGCTTGTATTGCTCTCCCACAACCCCGTTTTCACGGTTTAGGCTGCTCCCATTTCGCTCGCCGCTACTACGGGAATCGCTTTTGCTTTCTTTT
CCTCTGGCTACTAAGATGTTTCAGTTCGCCAGGTTGTCTCTTGCCTGCTCATGGATTCAGCAGGCAGTTCAAAAGGTTGACCTATTTGGGAATCTCCGGA
TCTATGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTGCTACGCCCTTCCTCGTCTCTGGGTGCCTAGGTATCCACCGCAAGCCTTTCCTCTTTTGA
ACCTCGCCATTAACGTTAAGGCTATGCCATCCTAAGGTGCTACTAAATGGAAGGATCTTATCAACGTCCATGAATGCG