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Detailed information on CNT3018289


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3B5|PSBA_SACHY, E-value = 0.0

BLAST vs NONCODE:
NONMTRT000175, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693051Zea maysOryza sativa50.9199.1794.851321forward
CNT30530127Zea maysEucalyptus grandis8.4868.9791.36220forward
CNT30378681Zea maysArabidopsis thaliana24.6266.3692.02639forward
CNT3021612Zea maysCitrullus lanatus3.7447.7893.8197forward
CNT30196112Zea maysPisum sativum14.9984.0289.2389forward
CNT3095573Zea maysSolanum tuberosum3.4322.0389.8989forward
CNT30185941Zea maysSecale cereale12.6836.2794.22329forward
CNT30300480Zea maysTriticum aestivum46.8692.8295.391216forward
CNT30391503Zea maysTriticum turgidum13.5670.495.45352forward
CNT3089384Zea maysVigna radiata21.7369.4689.89564forward
CNT30540531Zea maysBrassica napus40.315492.541046forward
CNT30555706Zea maysOryza glaberrima26.44100.1596.06686forward
CNT30145113Zea maysMedicago truncatula12.1896.3491.77316forward
CNT30441777Zea maysAegilops tauschii21.6299.6496.08561forward
CNT3059907Zea maysArabidopsis lyrata8.2141.8591.55213forward
CNT30598581Zea maysFraxinus excelsior10.1374.585.55263forward
CNT30605440Zea maysGossypium raimondii11.9575.7990.32310forward
CNT3067750Zea maysLeersia perrieri9.989796.14259forward
CNT30655381Zea maysRosa chinensis15.1173.2791.84392forward
CNT30627899Zea maysDaucus carota21.8944.7690.67568forward
CNT30683192Zea maysTriticum urartu36.8494.3793.41956forward
CNT30360185Zea maysLactuca sativa26.5596.0989.4689forward
CNT30484609Zea maysChara braunii5.0133.0885.38130forward
CNT3058324Zea maysAmborella trichopoda25.8297.188.66670forward
CNT30147990Zea maysBrachypodium distachyon42.1672.2693.241094forward
CNT30102095Zea maysOryza rufipogon5.2458.1294.85136forward
CNT30577776Zea maysOryza barthii7.1725.0794.09186reverse complement
CNT30499058Zea maysDigitaria exilis7.6346.5991.92198forward
CNT30117690Zea maysOryza nivara8.7170.498.67226forward
CNT3049694Zea maysCucumis sativus4.1236.0389.72107forward

Expression of CNT3018289

Peptides detected in this lncRNA

>peptide 1 (41 aa)
RNTQYPVGTRYWVFPAFLPSKIPICLGEKTLSIKVRNFKSS*

>peptide 2 (30 aa)
MHKRIHKEPYGFHEKTPGTLHQNVPSSQKR*

>peptide 3 (33 aa)
KKYPISCWNKILGISGFPSFKNSYMFRRKNLIH*

>peptide 4 (31 aa)
MLIVSKKIVYEETTRKIHILIHKSYIGIEIVF

>peptide 5 (31 aa)
MVFTKKPRVHYTKMFHLPRKDDSFQKGSRRC*

>peptide 6 (30 aa)
MVRSWFIQIARTSQAHVLTRKKIDNRRLVI*

>peptide 7 (39 aa)
MKVEVYILVDTKSVFFRRSTMIMKNISTYPTKTIKNIPI*

Sequence

>CNT3018289
AAAGAAATACCCAATATCCTGTTGGAACAAGATATTGGGTATTTCCGGCTTTCCTTCCTTCAAAAATTCCTATATGTTTAGGAGAAAAAACCTTATCCAT
TAAGGTAAGGAACTTCAAGAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACCTCCATACCAAGATTAGCACGGTTGATGATATC
AGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTGAAACCATTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGA
ACCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTG
AGCAGCCACAATATTATAAGTCTCTTCTTCCTGACCAAATTTGTAACCCTCATTAGCAGACTCATTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACC
AAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATA
CAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGGTAAATCAAGAAAAACAGCAGTAGCAGCTG
CAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAG
TGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCAGAAG
TAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGAGCAGCGATGAA
GGCGATAATAAATACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTG
CAGAAGCGACCCCACAGGCTTGTACTTTCGCGTCTCTCTAAAATTGCAGTCATGGTAAGATCTTGGTTTATTCAAATTGCAAGGACTTCCCAAGCACACG
TATTAACTAGAAAGAAAATAGATAATAGAAGGCTTGTTATTTAACAGTATAACATAGTCTATATACCAATGTCAACCAAGCCAGCCCCAACGATTGGATT
TTCGTATAACTTCATTTACCAAATCCAAAAATTTGGGAAATTAAGTTAGTAAAAATGAAAAACTCAGATTGCTCTTTCTATTTTCCATATGGGTTGCCCG
GGACTCGAACCCGGAACTAGTCGGATGGAGTAGATAATTCTTCCTTGTTACAATAGAAAAAACCCCTCCCCAAATCGTGCTTGCATTTTTCATTGCACAC
GACTTTCCCTATGTGGAAATAGCCAATTTCTATTCCGAAGAGGAAGTCCACTAATTTTGAGAATTTTTAATTAGTTAAAGTGATTCACCTACTATGGAAC
ATTTCAGAATGGAAAATGTGCAAGTTTTATCTTGATATCGATCTTTTCTAGTTTATTAATTTTGTCTAATGATTAATTAAGAGTAAGAGGATTCACCAGG
GTCATTGATACGGATAATATCCAAATACCAAATACGCTCACTGTGTGATCCATGGAAAGAAAAGTGAATTGTTTTGGTGAACATCAAAGAAAAAACTTGC
TCTTCTTCCGTAAAAAATTCTTCTAAAAATACCGAACCCAATCGTTGCATAAAAGTTCGTACCGTACTTTTATGTTTACGAGCTAAAGTTCTAGCACATG
AAAGTCGAAGTATATATTTTAGTCGATACAAAGTCTGTTTTTTTTCGAAGATCCACTATGATAATGAAAAATATTTCTACATATCCGACCAAAACGATCA
AGAATATCCCAATCTGATAAATCAGTCCAAACGGGTTTACTAATAGGATGCCCCGATCCAGTACAAAATTGAGCTTTTGATAAGGATCCGACAAGGGGAG
TTGCAAGGACTGTGGTATCGAATTTTTTCATTCGAGTATCTATTAGAAAAGAATTCTCCAGCATTTGATTCCTTACTAACAAAGTATTTATTGGTACACT
TGAAAGGTACCCAGAAAATCGAAGCAAGAGTTTGTTAATTGGTTTAGACGAATCCTTTGTGGTTGAGTCCAAAAAGAGAAAAAATATTGCGAGAAATTGA
CAAGGTAAGATTTCCCATTTCTTCTTCAAAAGAAGAGTGCCTTTTGATGCAAGAATTGCCTTTCCTTGATATCGAACATAATGCATAAGAGGATCCATAA
AGAACCATATGGTTTTCACGAAAAAACCCCGGGTACATTACACCAAAATGTTCCATCTTCCCAGAAAAGATGATTCGTTCCAGAAAGGTTCCAGAAGATG
TTAATCGTAAGCAAGAAGATTGTTTATGAAGAAACAACAAGAAAAATTCATATTCTGATACATAAGAGTTATATAGGAATCGAAATAGTCTTTTA