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Detailed information on CNT30182368


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36284|NU5M_MAIZE, E-value = 5e-100

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30197509Secale cerealePisum sativum25.6422.8595.77520forward
CNT30299594Secale cerealeTriticum aestivum33.2889.29100675forward
CNT30220987Secale cerealeHordeum vulgare23.8222.7699.79483forward
CNT30385170Secale cerealeTriticum turgidum67.3697.0999.491366forward
CNT30586133Secale cerealeMusa acuminata24.0122.0390.97487forward
CNT30147395Secale cerealeMedicago truncatula25.6412.2495.77520forward
CNT30437984Secale cerealeAegilops tauschii17.8595.7799.45362forward
CNT30467405Secale cerealeSaccharum spontaneum67.7584.7697.741374forward
CNT30210175Secale cerealeHelianthus annuus18.0597.3492.9366forward
CNT30627916Secale cerealeDaucus carota25.4914.3396.32517forward
CNT30427311Secale cerealePapaver somniferum32.6417.9893.35662forward
CNT30574574Secale cerealeVitis vinifera24.91596.44505forward
CNT3056795Secale cerealeAmborella trichopoda20.5678.3892.57417forward
CNT30104639Secale cerealeOryza rufipogon49.791.896.831008forward
CNT30577102Secale cerealeOryza barthii9.9688.9999.01202forward
CNT30115468Secale cerealeOryza nivara71.5542.0396.691451forward

Expression of CNT30182368

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MCSAMCSDYAILLVAFGLDSPLPRRDQLLRLGKRLKKSVSVYMCLRLCYPFPGKEIICLVKKTRIKNQKERRERTGSWRLHNR*

>peptide 2 (34 aa)
MIVGSTLKLTYSLGQSSECVRDTIRAQYLNSTLV*

>peptide 3 (90 aa)
MVGAANSDSARISFFGSTKGELAQKLDRGKDAAGCRRLIQVPPEPREMVAYYTAHKLCLGWGYLLFVGGTYGARRASVCCVDCLCISYRV*

>peptide 4 (44 aa)
MEEPSKPVPDDDAPWAKGKGPPFSFFPQSFRSFLSFPFVCFFGLV

>peptide 5 (57 aa)
MRREGSRGLSRRSLFPIHPEGFFPSLAPSSYPVLLSAQPYLFISFFLHGDFLDLSCS*

>peptide 6 (34 aa)
MLPLPRKGDYMFSKKNENKKSKRKKRKNWELAPT*

>peptide 7 (41 aa)
MELNQVTLQRHNDSRIHFEVDLFARPIVGMCTRYHKGPISQ*

>peptide 8 (33 aa)
MPPGRKERGRHSLSFLNRSDHFSHSLLFVFSGWF

>peptide 9 (30 aa)
MHFLQSVMEPSSAPPSQKKRTEQPEAKSRV*

>peptide 10 (32 aa)
MKDDLESTQEDRESHIREKVTNGVEPSNIAKA*

Sequence

>CNT30182368
CTGGAGGTATGATTCCGATCTTTGAATCGAATTGGATTTTGTGTCTTAAAGTGAGGGCGATGAGTGGGGAAGGAAGCTGACGATTTTATTAGTGTGTAAG
GTGGCCCCGAGAGCTGAACCAAAGCCGGCCGTTTCGAGACCAGGGAGCTTTAACAGTTTCTACTTAAACTATGTGTTCAGCTATGTGTTCAGATTATGCT
ATTTTATTAGTAGCTTTCGGTCTCGATTCGCCCTTACCTCGGAGGGATCAACTACTTCGCTTAGGCAAAAGATTGAAAAAGTCTGTATCTGTCTACATGT
GCCTCCGTCTATGTTACCCCTTCCCCGGAAAGGAGATTATATGTTTAGTAAAAAAAACGAGAATAAAAAATCAAAAAGAAAGAAGAGAAAGAACTGGGAG
TTGGCGCCTACATAACAGGTAGCTTGCTTACCAAGCCGTCCTGGCAAGCTCCTACAGTTCTCTTATTACTCTTGACTTGACTTATTAATAAGAAAACTAC
TCACTAACAAAATGAAAGACGATCTAGAATCTACCCAAGAAGATAGAGAGTCCCACATACGAGAAAAGGTCACAAATGGAGTTGAACCAAGTAACATTGC
AAAGGCATAATGATAGTAGGATCCACTTTGAAGTTGACTTATTCGCTCGGCCAATCGTCGGAATGTGTACGAGATACCATAAGGGCCCAATATCTCAATA
GCACCCTTGTCTAAAGCTTCGAATGAGACTGAATATCCGAAACGCAGGAACGATCTGACTAGAAAGTCATTCAAAACTTGATCGAAGAACCAGCGTTTAT
TGAAGAAGCTATAGAGTCGATTACAAAAAGTACTAGTTTGAAAGGCTCGTTGGAATTGATCCGCTACGAGATTTACATTATACGCTAGAGAAGCACCTGA
AGTACTAAACAGAATAGGTATTAGTTTTGTAATGGTTGGGGCAGCAAACTCGGATTCGGCAAGAATCTCATTTTTTGGTAGTACGAAGGGGGAATTGGCC
CAAAAATTGGATAGGGGTAAAGACGCAGCCGGGTGCCGGCGGCTTATTCAAGTGCCCCCCGAACCGCGCGAAATGGTCGCCTATTACACGGCTCACAAAC
TCTGCCTGGGGTGGGGCTACCTATTATTCGTAGGCGGTACGTACGGCGCACGCAGGGCCTCGGTTTGCTGCGTGGACTGTCTATGCATTTCCTACAGAGT
GTAATGGAACCCAGCTCAGCTCCGCCGAGCCAAAAGAAAAGAACAGAACAGCCGGAGGCGAAGAGTAGAGTATAGCCAAGGGGCTTTCGTCGTCCGTAAA
GGACCTAACGGAAGACCGTGCTCCGAAGTGTGCACTTCGAGTTTTGTTTTAAGAACACTTGGCCTTACCCCTTCATTTTGAGCCATGTCTAGGTAGAATC
GGCAAGATTGAACCGAGGCCCGCCCGGGCACCGCCGGGGGACAACCAGACCAACCAGTAGGCTTTCTTTCCGAAGTTTCCTCCCGGGGCCCTTAAATCAT
TGAATTCATAGGCATAGGGGCGTCCCAGGCAGTGGTTCATTCAATGAGAAAGAAAGACAGGAGGGCAGGATTCGTCGTGTCGGGCTAATTCATTCTGGGA
AAAAAGGGGGAAGGGAGTCACCTGAGCTATGCGAAGGGAAGGAAGTCGTGGGCTGAGCCGGAGGTCACTTTTCCCGATCCATCCCGAAGGGTTTTTTCCC
TCTCTCGCCCCATCATCGTACCCAGTCCTGCTATCGGCTCAGCCCTATCTATTCATCTCTTTTTTTTTACATGGAGATTTTTTGGATCTCTCTTGTTCAT
AGATCTTGAAAGCGGATCAATAGAAATTTCTCAAAGGATCTATCTATAGAAAGATCTAGATATCTATCATCATCTATCTCTATATCTAGATATGGAAGAA
CCCTCGAAGCCTGTCCCCGACGACGATGCCCCCTGGGCGAAAGGAAAGGGGCCGCCATTCTCTTTCTTTCCTCAATCGTTCCGATCATTTCTCTCATTCC
CTTTTGTTTGTTTTTTCGGGTTGGTTCG