Detailed information on CNT3018235


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670953Zea maysSetaria viridis15.0331.5399.66291reverse complement
CNT30637323Zea maysCapsicum annuum20.0427.4891.49388forward
CNT3098505Zea maysSolanum tuberosum20.5640.5794.47398reverse complement
CNT30360998Zea maysLactuca sativa12.6584.4898.37245forward

Expression of CNT3018235

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MEVWLGLVTTTSSWRRRKTRHEGQPPGWCGT*

>peptide 2 (33 aa)
MTGLEEEAPANSVPAAAVRRGGGGASVLRNDWA*

>peptide 3 (37 aa)
MGTRTGLDTLVVHAVNDECSPLVCLRYATRIRGPANA*

>peptide 4 (37 aa)
MLNTCKSNVVFGELGRRKKRLLAKVVSPCLQGRAQRL*

>peptide 5 (42 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNIA*

>peptide 6 (47 aa)
MTSSPHGPYGLGHTRATMAMTMGSKAVRRSESGKIASVRIVLCNSGT*

>peptide 7 (91 aa)
MKASRPGGVVRSGNSTRPAPKQRKRCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSDCSLQLGNMK*

>peptide 8 (46 aa)
MYPGPVHTARHTLGIGFARSIGPMITHDFCVPLVPQRPLVVLLAHTT

>peptide 9 (53 aa)
MLSKPIHLSETEESGISCVGVKSVDLRRNAKSEGSSLGPYRRWGAKAWGREQD*

>peptide 10 (97 aa)
MSVRPWSVYATLRGSGAQLTRETLRLGSTVARPKLKGIDGGLHKRWSMWFNSIQRAKPYQPLTYEQQNLSLTGWYLLSYRYCMAVVSSCREMFGQVL*

Sequence

>CNT3018235
CCAGGTTCTACCACTGTTCGGCCCAATCATAGTCAAAATCTGAGTTTGATCCTGGCTCAGAAGGAACGCTAGCTATATGCTTAACACATGCAAGTCGAAC
GTTGTTTTCGGGGAGCTGGGCAGAAGGAAAAAGAGGCTCCTAGCTAAAGTTGTCTCGCCCTGCCTGCAGGGCCGCGCGCAACGGCTTTGACCTAACGGCC
TCCGTTTGCTGGAATCGGAATAGTTGAGAACAAAGTGGCGAACGGGTGCGTAACGCGTGGGAATCTGCCGAACAGTTCGGGCCAAATCCTGAAGAAAGCT
CAAAAGCGCTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCC
ACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCATGAGTGAA
GAAGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTA
AGACGGGGGGGGGGGGGGGCAAGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAGTCGCCAAAAAGTGGC
GGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCG
AAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGACGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGT
TCGCCCTTGGTCTGTCTACGCTACGCTACGCGGATCAGGGGCCCAGCTAACGCGTGAAACACTCCGCCTGGGGAGTACAGTCGCAAGACCGAAACTCAAA
GGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATATGAACAACAAAACCTGT
CTTTAACGGGATGGTACTTACTTTCATACAGGTACTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTC
GTTTTGTGTTGCTGAGACATGCGCCTAAGGAGAAATAGCCGAGGAGCCGAGTGACGTGCCAGCGCTACTACTTGATTGAGTGCCAGCACGTAGCTGTGCT
TTCCGCAAGAATTTCACCATTGGGAGCCTCGAAGCACTTTCACGTGTGAACCGAAGTCGTCTTGCCGAACTCAAGACCCACGGAGACCTACCTATAGTGA
CGTCAAAGTACCAGTGAACATGGAGGTTTGGTTAGGCTTGGTTACGACGACGTCGAGTTGGCGGCGGAGGAAGACTCGGCATGAAGGCCAGCCGCCCGGG
TGGTGTGGTACGTAGTGGTAATAGTACGCGCCCCGCTCCGAAACAAAGAAAAAGGTGCGTGCCGCACTCACGAGGGACTGCTAGTGAGATACTGGAGGAA
GGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAA
TCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGTAGAAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTA
CCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGGTTTCGCCCGAAGCATCGGACCAATGATCACCCATGACTTCTGTGTACCACTAGTGCCA
CAAAGGCCTTTGGTGGTCTTATTGGCGCATACCACG