Detailed information on CNT3018230


BLAST search results

BLAST vs Swiss-Prot:
sp|A8Y9D1|RR7_LOLPR, E-value = 3e-82

BLAST vs NONCODE:
NONOSAT000698, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695659Zea maysOryza sativa79.1168.198.78572forward
CNT30677883Zea maysSetaria viridis63.0730.5699.34456forward
CNT30617775Zea maysSesamum indicum71.6578.2587.45518forward
CNT30730546Zea maysCorchorus capsularis55.4667.8590.52401forward
CNT30300194Zea maysTriticum aestivum100.1434.4198.34724forward
CNT30384007Zea maysTriticum turgidum60.4450.0698.17437forward
CNT30543269Zea maysBrassica napus73.1717.8791.12529forward
CNT30509374Zea maysSolanum lycopersicum9.8235.591.5571forward
CNT30136937Zea maysLolium perenne69.0278.9697.39499forward
CNT30230544Zea maysAnanas comosus35.4152.7894.53256reverse complement
CNT30153780Zea maysPrunus persica49.139.6689.01355forward
CNT30331679Zea maysDioscorea rotundata66.9470.6691.74484forward
CNT30150659Zea maysBrachypodium distachyon30.5794.4491.86221forward
CNT30115844Zea maysOryza nivara79.6766.1398.96576forward

Expression of CNT3018230

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MIFFRLFIIRLTTMLTNRLRKIGSDFAVLFFCSTST*

>peptide 2 (36 aa)
SVHGLTKMCKSSICLCHSMSRFLFAYGTPTPFGSIY*

>peptide 3 (41 aa)
CSWINENVQELYLPLPFYESLPFCVWHPHSLWQHLLIRNLI*

>peptide 4 (72 aa)
MAPPLPLAASTNSELNLKAIFRPGRFWDASNNQRMASALPCLDPISIGTFRVDPFLLRLVFTPILGVTLRIA*

Sequence

>CNT3018230
TCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCA
GCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTT
TAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAA
AACCAATAGTGGATTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTTCATAATACGG
TTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCGGTTCTTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGAGGTT
CAAGAATCCGTTTTCTTTTTATAAGGGCTAAAAACGAATCACTTATTTTTTTGGCTTTTTGGCCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGA
TCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTT
TAAATTGAGTATCCGTTTCCCTC