Detailed information on CNT3018229


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XQE1|RR12_SOLNI, E-value = 2e-22

BLAST vs NONCODE:
NONTPRT004967, E-value = 7e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30537475Zea maysEucalyptus grandis33.931.8888.1676reverse complement
CNT30524944Zea maysPhaseolus vulgaris10022.4994.64224reverse complement
CNT30220990Zea maysHordeum vulgare31.75.610071reverse complement
CNT30384312Zea maysTriticum turgidum84.824.35100190forward
CNT30599132Zea maysFraxinus excelsior30.3612.6286.7668reverse complement
CNT30351849Zea maysEragrostis tef64.2936.1895.83144forward
CNT30100515Zea maysOryza rufipogon84.3874.4195.77189forward

Expression of CNT3018229

Peptides detected in this lncRNA

>peptide 1 (47 aa)
HNLQEHSVVLVRGGRVKDLPGVRYRIIRGTLDAVAVKNRQQGRSSAL*

Sequence

>CNT3018229
CATAATTTACAAGAACATTCTGTAGTATTAGTAAGAGGAGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCGCATTATTCGAGGAACCCTAGATGCTG
TCGCAGTAAAGAATCGTCAACAAGGGCGTTCTAGTGCGTTGTAGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATGTGAATCGCTAGAAACATG
TGAAGTGTATGGCTAACCCAATAA