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Detailed information on CNT30182270


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672379Secale cerealeSetaria viridis59.9673.7287.01331forward
CNT30520774Secale cerealeSetaria italica60.8729.8788.99336forward
CNT30639966Secale cerealeNymphaea colorata27.179.9982.67150forward
CNT30533956Secale cerealeEucalyptus grandis28.0822.2183.87155forward
CNT30516978Secale cerealeJuglans regia27.922.5881.17154forward
CNT30629841Secale cerealeVigna unguiculata28.4426.8483.44157forward
CNT30712288Secale cerealeGlycine max25.7224.6182.39142forward
CNT30294278Secale cerealeTriticum aestivum78.8100.9394.25435forward
CNT30222663Secale cerealeHordeum vulgare49.8254.3589.45275forward
CNT30390478Secale cerealeTriticum turgidum54.1725.0888.96299forward
CNT30564216Secale cerealeActinidia chinensis22.4655.6183.87124forward
CNT3084712Secale cerealeVigna radiata23.7346.2983.97131forward
CNT30437582Secale cerealeAegilops tauschii33.1555.4592.35183forward
CNT30249726Secale cerealeAvena sativa29.8920.5793.94165forward
CNT30662078Secale cerealeTriticum dicoccoides10.6920.3496.6159forward
CNT30454500Secale cerealeSaccharum spontaneum30.0745.8687.95166forward
CNT30135064Secale cerealeLolium perenne28.6227.6794.3158forward
CNT304588Secale cerealeZea mays59.9625.6687.92331forward
CNT30129085Secale cerealeCorymbia citriodora28.0814.7284.52155forward
CNT30683149Secale cerealeTriticum urartu29.8937.2598.18165forward
CNT30720963Secale cerealeTriticum spelta52.1751.7188.89288forward
CNT30344813Secale cerealeEragrostis tef27.929.4589.61154forward
CNT3027985Secale cerealeTheobroma cacao25.3625.7880.71140forward
CNT30319122Secale cerealeAsparagus officinalis28.0810.4889.03155forward
CNT30104607Secale cerealeOryza rufipogon17.5727.0290.7297forward
CNT30578384Secale cerealeOryza barthii24.0933.9389.47133forward
CNT30582394Secale cerealeEchinochloa crusgalli29.8944.2490.3165forward
CNT30556884Secale cerealePanicum hallii29.8922.7393.33165forward
CNT30551896Secale cerealeOryza brachyantha28.2623.5391.67156forward
CNT30112090Secale cerealeFicus carica27.367.3884.11151forward
CNT3040359Secale cerealeMarchantia polymorpha23.3717.2281.4129forward

Expression of CNT30182270

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MAPETPPKKKPPVNCDHPSAVCSLSASFLRPVSVRAGAEVAVGEADLDAAEERADGGAVRGEVGEVPRDEGAGGDGRLEAADERVAVDGLDH

>peptide 2 (76 aa)
MPIINLLEEVWEVEDVEEEVGPDGAGNTTEEEASGELRPPFGGLQLVSLLLAAGEREGGRGGSRGRGRSRCRGGAG*

>peptide 3 (44 aa)
MPRRSGLTAVRYAGRLERYHATRGLEVTGVSRLPMNGSPLMGWTT

Sequence

>CNT30182270
TATGTAGTAATTTGATGAAATATTTAGAAAGACAAATATTTAGGAATGGAGGGAGTAGATATTAAACATTCCCATGTTATAACACGCAGTATCATCCATC
CAAAGATTGTGAGGAATACGTAAGTTCATTTATACATAGACTCTTTCAACCAACCACCAAGAAGAGATGACATCATCTGCAGTTGTGCACCCATCGTACA
TGCATCCATGCCAATAATTAATCTACTTGAAGAAGTATGGGAGGTCGAGGACGTAGAGGAGGAAGTAGGCCCAGATGGCGCCGGAAACACCACCGAAGAA
GAAGCCTCCGGTGAACTGCGACCACCCTTCGGCGGTCTGCAGCTTGTCAGCCTCCTTCTTGCGGCCGGTGAGCGTGAGGGCGGGCGCGGAGGTAGCCGTG
GGCGAGGCCGATCTCGATGCCGCGGAGGAGCGGGCTGACGGCGGTGCGGTACGCGGGGAGGTTGGAGAGGTACCACGCGACGAGGGGGCTGGAGGTGACG
GGCGTCTCGAGGCTGCCGATGAACGGGTCGCCGTTGATGGGCTGGACCACCT