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Detailed information on CNT30182233


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZC0|UXS1_ARATH, E-value = 2e-88

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Secale cerealeSetaria italica64.1553.284.71399forward
CNT30530404Secale cerealeEucalyptus grandis37.9466.4887.71236forward
CNT30316147Secale cerealeCorylus avellana52.4143.7683.13326forward
CNT30703138Secale cerealeQuercus lobata53.3863.3681.33332forward
CNT30500451Secale cerealeCoffea canephora24.4414.2582.89152forward
CNT30615836Secale cerealeSesamum indicum22.9937.3482.52143forward
CNT30268105Secale cerealeChenopodium quinoa23.4717.481.51146forward
CNT3021362Secale cerealeCitrullus lanatus28.9427.6581.67180forward
CNT30729539Secale cerealeCorchorus capsularis51.9348.0778.33323forward
CNT3068683Secale cerealeQuercus suber54.3468.781.66338forward
CNT30524728Secale cerealePhaseolus vulgaris51.9359.8180.19323forward
CNT30486152Secale cerealeOlea europaea47.1132.3879.18293forward
CNT30504810Secale cerealeNicotiana attenuata24.1223.0483.33150forward
CNT30636701Secale cerealeCapsicum annuum24.1236.584.67150forward
CNT3091042Secale cerealeSolanum tuberosum19.6133.4283.61122forward
CNT30222279Secale cerealeHordeum vulgare48.5510097.68302forward
CNT30590847Secale cerealeMusa acuminata55.6375.7182.95346forward
CNT30510868Secale cerealeSolanum lycopersicum27.8183.1781.5173forward
CNT30143812Secale cerealeMedicago truncatula26.8513.582.04167forward
CNT30246244Secale cerealeAvena sativa64.1549.0295.74399forward
CNT30661043Secale cerealeTriticum dicoccoides24.641.5898.69153forward
CNT30457014Secale cerealeSaccharum spontaneum64.1552.2392.23399forward
CNT30134072Secale cerealeLolium perenne64.1554.9694.49399forward
CNT3066796Secale cerealeLeersia perrieri61.7498.7193.75384forward
CNT30653881Secale cerealeRosa chinensis41.824.3481.92260forward
CNT30338563Secale cerealeEragrostis tef63.595.4190.63395forward
CNT30477892Secale cerealeArabidopsis halleri35.6920.7579.73222forward
CNT30363710Secale cerealeSorghum bicolor36.6638.8487.72228forward
CNT30595456Secale cerealeOryza meridionalis63.569.394.43395forward
CNT30355562Secale cerealeLactuca sativa28.4630.3681.92177forward
CNT30424172Secale cerealePapaver somniferum25.422.6486.08158forward
CNT3054595Secale cerealeAmborella trichopoda22.5167.6385140forward
CNT30105598Secale cerealeOryza longistaminata39.3935.5686.94245forward
CNT30319856Secale cerealeAsparagus officinalis33.2873.9387.44207forward
CNT30580107Secale cerealeEchinochloa crusgalli64.1576.8891.98399forward
CNT30497454Secale cerealeDigitaria exilis59.8110092.74372forward
CNT30115589Secale cerealeOryza nivara36.9816.1286.96230forward
CNT30594668Secale cerealeEragrostis curvula50.3292.8893.29313forward
CNT30174824Secale cerealeVigna angularis64.154280.7399forward
CNT30550386Secale cerealeOryza brachyantha29.5866.9188.04184forward
CNT30336663Secale cerealeCynara cardunculus25.8834.4886.34161forward
CNT30723923Secale cerealeLupinus angustifolius22.6768.7882.98141forward
CNT3064271Secale cerealeSelaginella moellendorffii43.2548.9180.67269forward

Expression of CNT30182233

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MRGTRGGRSGRPREGWARRRRGGAARTWGSAGGARRSPSSR*

>peptide 2 (97 aa)
MGSTTSWRSSSNLGFRRWCATFSFLPVKKLSTTITLSPCSSSLSTRWLPTKPAPPVTTTRRGGGRKPAGTPRESDARAAKEKMGLRSVGLDADREKR*

Sequence

>CNT30182233
ACCTATAGGATTAACATGCCCCCAATAAGTCTCCTTCTGCGGATGCTCAAGTGGGTCACCATAAACTTCACTTGTGCTAGTTAACAAGAACCTTGCACCG
ATTCGCTTAGCCAGACCCAACATATTCAAGGTTCCCATGACATTTGATATGATGGTCTTGATGGGGTTGTACTTGTAGTGCACGGGCGATGCGGGGCACG
CGAGGTGGTAGATCCGGTCGACCTCGAGAAGGATGGGCTCGACGACGTCGTGGCGGAGCAGCTCGAACCTGGGGTTCCGCAGGTGGTGCGCGACGTTCTC
CTTCCTCCCGGTGAAGAAGTTGTCCACCACGATCACGCTGTCCCCCTGCTCCAGCAGCCTGTCGACGAGGTGGCTCCCCACGAAGCCCGCCCCGCCGGTG
ACGACGACGCGGCGAGGCGGCGGGCGGAAGCCCGCGGGGACGCCGCGGGAGTCGGACGCGCGGGCGGCGAAGGAGAAGATGGGGCTTCGCTCGGTGGGGT
TGGATGCTGACAGGGAGAAGAGGTAGGGGCGGAGGAGGAAGAAGGAGGTGGCGATGAGCGCGCCGAGGAGGACGAAGAGGAGGCGCTGCTCGCGGAGGAG
GTAGCCGACCCAGGTGCGCGGC