« Back to Secale cereale search


Detailed information on CNT30182098


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30389742Secale cerealeTriticum turgidum77.1770.4987.37578forward

Expression of CNT30182098

Peptides detected in this lncRNA

>peptide 1 (49 aa)
IGSLFVIQSRFIASNNYLLFLSVLLVELSIPQILRGTDFRLHADQNDGK*

>peptide 2 (57 aa)
MASAWYSPFTGKSFPSNGSASLTNIFLSLIRGTRCPWPCPPRSSSASARGANSRSPGD

>peptide 3 (83 aa)
MSMISQDDFVAALTSCLCGVRYTRNVRGQRYSSAASPPLCISHNYYPIYGRLAHLCFISLSALISETMSFLGGVLQSPSPPLA*

Sequence

>CNT30182098
AATTGGAAGTCTTTTCGTTATTCAATCACGGTTCATCGCATCCAATAATTATCTTTTGTTTTTGAGTGTTCTACTAGTAGAGTTATCAATTCCACAAATC
CTCCGCGGCACAGATTTTAGATTACATGCAGACCAGAATGATGGAAAATGACGACGGCTGCATATATGTTGATCTAGAAGCTAATGAACGTGTCAGTCCT
CGGAACAGCTGAGGAAAAGACGGCTCAACTCTTGGCTTTTGCTGCTGGAATTTGAGGCCTTGACTAACAAATGAGTATGATCAGTCAAGATGACTTTGTG
GCTGCTCTTACATCCTGCCTATGTGGTGTACGGTACACAAGAAATGTGAGGGGGCAGAGATATAGTTCTGCTGCATCTCCTCCCTTATGCATCTCTCATA
ATTATTATCCTATATATGGTCGTCTGGCTCATCTCTGCTTCATTTCGTTATCGGCTTTGATCTCAGAAACCATGTCCTTTTTGGGAGGAGTGCTGCAGTC
CCCGTCTCCGCCCTTGGCCTGAGCGGCCGCCCGGTCCCGTTGAGGGTAGTATTTCTGTTCGGCGAGGAAGGCGATGGCGAGCGCCTGGTACAGCCCCTTC
ACCGGGAAGTCCTTCCCCAGCAACGGATCCGCCAGCCTCACGAACATCTTCCTGTCCCTGATCAGAGGTACTCGATGCCCTTGGCCGTGCCCACCGCGAT
CTTCATCCGCGTCTGCCAGGGGAGCGAATTCGCGTTCTCCGGGAGATCT