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Detailed information on CNT30181978


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT003033, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640799Secale cerealeNymphaea colorata83.8297.3787.99741reverse complement
CNT30490123Secale cerealeOlea europaea59.530.2197.15526reverse complement
CNT30712870Secale cerealeGlycine max48.9826.0595.61433reverse complement
CNT30592527Secale cerealeMusa acuminata21.3856.5998.41189reverse complement
CNT30511493Secale cerealeSolanum lycopersicum34.2833.8996.7303forward
CNT3082633Secale cerealeBrassica juncea35.7596.0595.57316reverse complement
CNT30605266Secale cerealeGossypium raimondii54.1922.8996.45479reverse complement
CNT30363124Secale cerealeSorghum bicolor26.02101.3291.3230reverse complement
CNT30118490Secale cerealeCitrus clementina10.5220.9993.5593reverse complement
CNT3038420Secale cerealeCucumis melo76.4747.3497.34676reverse complement
CNT30577866Secale cerealeOryza barthii28.1715.2999.6249forward
CNT30550626Secale cerealeOryza brachyantha34.16103.0791.39302forward

Expression of CNT30181978

Peptides detected in this lncRNA

>peptide 1 (51 aa)
RLTERRKPSTGRRSCFSQDFSLLMSAFSLLISPGLVTKNLPRLTERPATDT*

Sequence

>CNT30181978
AGATTGACTGAACGCAGAAAGCCTTCCACTGGCAGGCGTTCGTGTTTTTCACAGGATTTCTCGTTACTCATGTCAGCATTCTCACTTCTGATATCTCCAG
GTCTTGTCACCAAAAACCTTCCCCGATTGACAGAACGTCCCGCTACTGACACTTGAAAAAGCTGCTTTCAAGGTCTCGTCGCTTCGGTGAATCACTTGAG
CCCTGAGACATTTTCGGTGCCATGGAGCTAGACCAGTGAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCGCTC
GATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCTGTTTCCCTCTCGACTTTGGATCTTAGCACCCAATCAGTCTGTC
TGTACTAAGGATGACGGCCTGTATTCGGAGTTTCCCTGGGGTTGGTAAAGCGAAATGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGA
CATCATACGCTCTACTGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCA
CATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTCAAATAGGAAGAACGTAAATCTT
CCACCTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCCCATTTCCTCGCTGACCCATCATGCGAAAGGTACGCCGTTAGAGTGAGTGCGCCC
GCGCTCCGCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATTGGGGTTCTTTTCACCTTTCC