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Detailed information on CNT3018194


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3C7|RR12_SACHY, E-value = 2e-46

BLAST vs NONCODE:
NONVVIT000515, E-value = 6e-108

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677912Zea maysSetaria viridis100.1736.599.66587forward
CNT3021516Zea maysCitrullus lanatus79.3525.2993.33465forward
CNT30406883Zea maysBeta vulgaris23.0452.5387.41135forward
CNT30201818Zea maysPisum sativum55.2923.5394.14324forward
CNT30492881Zea maysOlea europaea35.8432.5686.19210forward
CNT30710142Zea maysGlycine max29.8639.2492.57175forward
CNT30284960Zea maysTriticum aestivum80.8953.3897.05474forward
CNT30569656Zea maysActinidia chinensis59.941.6994.59351forward
CNT3083498Zea maysVigna radiata31.2378.8884.15183reverse complement
CNT30237740Zea maysBrassica oleracea46.9322.9479.27275forward
CNT3077654Zea maysBrassica juncea31.5741.1181.62185forward
CNT30610163Zea maysGossypium raimondii36.8640.686.11216forward
CNT30228329Zea maysAnanas comosus34.8198.5591.18204forward
CNT30684722Zea maysTriticum urartu71.6739.3697.62420forward
CNT30364733Zea maysSorghum bicolor32.7678.6995.31192forward
CNT30355468Zea maysLactuca sativa101.8848.8190.95597forward
CNT30416238Zea maysPapaver somniferum92.8371.0292.65544forward
CNT30324879Zea maysAsparagus officinalis42.1570.3791.09247reverse complement
CNT30604848Zea maysOryza punctata46.9384.196.73275reverse complement

Expression of CNT3018194

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MIKGEDCSFTKHMRIKSRLIIRRNLSRYQSPCPS

>peptide 2 (31 aa)
MRYLTPGKSLTLPPLTNTTECSCKLWPIPGI*

>peptide 3 (38 aa)
MRFSPHTAPRSILSKGSFSSFESLRPSSTPSRRLTKTN*

>peptide 4 (29 aa)
WHHQMIQVLDKNLQRTRTPLLTILYCDSI*

Sequence

>CNT3018194
ATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCG
AATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAA
GCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTC
ATCCTTACTGTCCCTCTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGTTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCT
CCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGATTAAAGGAGAAGA
TTGTTCTTTTACCAAACATATGCGGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCAT