Detailed information on CNT30181670


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FJX2|RL262_ARATH, E-value = 7e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690207Secale cerealeOryza sativa41.6137.5490.76119forward
CNT30522907Secale cerealeSetaria italica92.6646.995.09265forward
CNT30536141Secale cerealeEucalyptus grandis26.2220.6689.3375forward
CNT3082886Secale cerealeBrassica juncea38.4642.888.18110forward
CNT30230974Secale cerealeAnanas comosus36.3616.2587.5104forward
CNT30714885Secale cerealeMalus domestica golden47.227.7284.44135forward
CNT30720826Secale cerealeTriticum spelta94.4145.396.3270forward
CNT30597158Secale cerealeOryza meridionalis92.6638.6390.19265forward
CNT30355705Secale cerealeLactuca sativa47.236.9982.22135forward
CNT30371509Secale cerealeOryza glumipatula92.6645.7791.7265forward
CNT30105031Secale cerealeOryza longistaminata91.6133.9889.69262forward
CNT30149302Secale cerealeBrachypodium distachyon84.6240.4797.11242forward

Expression of CNT30181670

Peptides detected in this lncRNA

>peptide 1 (89 aa)
DPLHVDDPAAAVDLHHLSLTALVGAAHDLHLVVLADRDGADVVLVAEFRGEGRGHEHAADGGRRREVRLAALPAGARDAGVALHGGGGG*

>peptide 2 (56 aa)
MERTLYLWRSSEERAADMSTRRTEDGAVKCALRHFRRELVTRGLRFMAAAGGRVLGR

Sequence

>CNT30181670
GTGATCCGCTCCACGTGGATGACCCAGCGGCGGCGGTAGACCTGCACCACCTTTCCCTCACGGCCCTTGTAGGTGCCGCGCACGACCTGCACCTCGTCGT
CCTTGCGGATCGGGATGGAGCGGACGTTGTACTTGTGGCGGAGTTCCGAGGAGAGGGCCGCGGACATGAGCACGCGGCGGACGGAGGACGGCGCCGTGAA
GTGCGCCTTGCGGCACTTCCGGCGGGAGCTCGTGACGCGGGGGTTGCGCTTCATGGCGGCGGCGGGGGGTAGGGTTCTGGGGCGGG