Detailed information on CNT3018165


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTAET000209, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30383400Zea maysTriticum turgidum82.1957.9797.69909forward
CNT30496898Zea maysDigitaria exilis84.5451.6994.76935forward
CNT30595404Zea maysEragrostis curvula82.7394.2397.38915forward
CNT30558388Zea maysPanicum hallii86.4468.8397.07956forward

Expression of CNT3018165

Peptides detected in this lncRNA

>peptide 1 (45 aa)
AGRGGPGTAPSGPSPGVEQPTQNWYGQGESDCLIKTKHCDGPRGC*

>peptide 2 (39 aa)
MTAPRRRAAGAFGLAFGPKTRGSPMAHGPKTEVRAWPRK*

>peptide 3 (32 aa)
PAGGDRERPPRGLPRASNNRLRTGTDKGNPTV*

>peptide 4 (33 aa)
RPGGTGNGPLGAFPGRRTTDSELVRTRGIRLFN*

>peptide 5 (34 aa)
MNGLTRFPLSLSTIQRNHSQGNGLGGISGERRPC*

>peptide 6 (55 aa)
MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWRNQRGKKTLLSLTLVRLCEMT*

Sequence

>CNT3018165
GCCGGCCGGGGGGGACCGGGAACGGCCCCCTCGGGGCCTTCCCCGGGCGTCGAACAACCGACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAA
TTAAAACAAAGCATTGCGACGGTCCTCGAGGATGCTGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGG
TAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCT
GTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAA
TGACTTGAGAGGTGTAGGATAAGTGGGAGCCTCCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGGGTCGGAAGCGGGGCA
CCGCCCCTCCTTTTGGCTCCAAGGCCCGGCTCTCGCCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAA
AAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATA
CGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCC
AAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATA
GGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACCGCGCCGCGACGACGGGCGGCAGGGGCGTTCGGCCTTGCGT
TTGGGCCGAAAACGAGGGGTTCGCCCATGGCGCACGGGCCGAAAACCGAGGTTCGGGCATGGCCCCGGAAATAAGCTAAGTCCAAGCGTGTGGAAAGACA
CCGAAC