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Detailed information on CNT30180942


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30387046Secale cerealeTriticum turgidum92.1992.5892.1873forward
CNT30240769Secale cerealeAvena sativa36.6444.3785.59347forward
CNT30466191Secale cerealeSaccharum spontaneum17.2123.5592.02163forward
CNT30132778Secale cerealeLolium perenne31.1537.1187.8295forward
CNT3017302Secale cerealeZea mays16.2621.5792.86154forward
CNT3067371Secale cerealeLeersia perrieri16.4720.7493.59156forward
CNT30342484Secale cerealeEragrostis tef17.1125.2792.59162forward
CNT30596127Secale cerealeOryza meridionalis20.3829.9290.16193forward
CNT30107264Secale cerealeOryza longistaminata20.725.9689.8196forward
CNT30585288Secale cerealeEchinochloa crusgalli16.4730.9592.95156forward
CNT30603959Secale cerealeOryza punctata20.9125.9289.9198forward

Expression of CNT30180942

Peptides detected in this lncRNA

>peptide 1 (32 aa)
KVARARRLTLRVYQPAETTQFPLISEGGKNRN*

>peptide 2 (36 aa)
MFRLVSAEKLERNDLCVVVFVAVFYCMFALSMVVVY*

>peptide 3 (65 aa)
MNWIGRKIHLYNVNIGLYMLDWWERYLFNTLMLCLLWYILRYLVGFFQSNLETILHGANYLLQGS*

Sequence

>CNT30180942
AAAAAGTCGCACGCGCACGGCGGCTGACGCTACGCGTCTATCAGCCGGCAGAAACGACTCAGTTTCCTCTCATTAGTGAGGGTGGCAAAAACAGAAACTA
GCTGTCCACGGAAAAACCCTTTACATGTGAAGTTCAGATCTGAAGCGTTTGGCTTCCGAACAAACCCACGCTATCGACCGAGACGAGATCCTCTGAGAGA
TCCGCCCCGATCCCGCAAGGCACCACGCCCTTCTTCCTCCTCGGAAAATTCAACATCTCGCCGCTTGATTCCGGATCCGAGCGAGGGATCTGCCCGCGTC
GGGTCTCATTGGGGGAGGATGAACTGGATCGGGCGCAAGATCCACCTCTACAATGTCAACATCGGCCTCTACATGCTCGATTGGTGGGAGCGCTACCTCT
TCAATACATTGATGCTTTGCCTTCTCTGGTACATTCTACGGTATCTTGTTGGGTTCTTTCAAAGTAATCTGGAGACCATCCTACATGGTGCGAACTATCT
TCTGCAAGGTAGTTAATCCTCTAAGGCAAAAGCACATATGTTGATGGCTTTATGGAACTCCCCCTGTAATCTATGTTTCGATTAGTCTCAGCTGAGAAAC
TAGAAAGGAACGACTTATGTGTTGTTGTGTTTGTAGCCGTCTTTTACTGTATGTTTGCATTGTCCATGGTTGTAGTATATTGATGTTGCTGATTATCAGT
TGACTGCTTGGGACTATCGTAAATCTAGTTGGCTTGATTTGCACATCACTAAACCTAAAATTGCAGTCCAAGTTTTAGTCTTCTCATTTTTCCTTAGTTG
GGTTCATCCTCTCCCGTGATTGTGTAAGAGAATCTCATGAACTTAGCTATACACTGCCCATATGTATAGCCCTCTGTATTTTGGAATTTAGTTTCTTCTT
CTTTTTTACCTTATGTGCTGTTGACTTTAAGTAATTTTTTGCTGAAG