Detailed information on CNT30180865


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 3e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672909Secale cerealeSetaria viridis48.848.882.32345forward
CNT30521106Secale cerealeSetaria italica48.847.5982.32345forward
CNT30555612Secale cerealeOryza glaberrima52.6235.686.83372forward
CNT30136970Secale cerealeLolium perenne54.7460.5687.6387forward
CNT30681645Secale cerealeTriticum urartu69.1733.4295.91489forward
CNT30597241Secale cerealeOryza meridionalis43.4235.2585.34307forward
CNT30150944Secale cerealeBrachypodium distachyon52.1955.2489.16369forward
CNT30104669Secale cerealeOryza rufipogon52.4844.7586.25371forward
CNT30556975Secale cerealePanicum hallii34.3730.4186.42243forward
CNT30551876Secale cerealeOryza brachyantha50.0741.1685.31354forward

Expression of CNT30180865

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MWNLRMHAQEPMFIHAYTNPIEQKVCSGRKAESCSRVMDKSEVHKRTSYEIGNCFNS*

>peptide 2 (32 aa)
PPTSCETYPLPCQIKKLFHELITARQWSACCI*

Sequence

>CNT30180865
TTCCACCCACTAGTTGTGAGACATATCCATTGCCGTGCCAAATAAAAAAACTTTTCCATGAATTAATAACAGCAAGACAATGGTCCGCGTGTTGTATATA
ATAAATATTACAGGTTTTGCATATGTGTAGCCCGTGCTTATAGACCTATGTGGAATTTACGTATGCATGCTCAAGAACCTATGTTCATACATGCATACAC
AAATCCTATAGAACAAAAAGTATGCTCCGGTCGGAAAGCAGAGTCCTGCAGCAGAGTCATGGACAAAAGTGAAGTTCACAAAAGAACTTCATACGAAATA
GGCAATTGTTTCAACTCGTAGTTTATGCCTTGCCGGACTCCTCGCAACCCGGTGGCCTGAAGGCGATGAAGCTGACGCACTGCACCTGGCGCAGGTTGTC
GAAGCCGATGACACGGACATAGGCGTCAGGGGTACTCCTTCTTGACCTCCTCCACCTCATTGAGCACCTGCGTGGCGTCGGTGCACCCGAACATAGGCAA
CTTCCACATTGTCCAGTATCGACCGTCGTAGTACCCGGGGGAGTTGTTGTGCTCACGGAAGACGAAGCCAACCTTGCTGAACTCGAGGCAGGGCACCCAC
TTGGAGCGGATCAGGTAGTCGACCTGCTTCAGGAGGGCCTCCGTGGAGAGGGGTGGCAAGTAGGACAGGGTCTCGAACTTCTTGATGCCCTCAATTGGCC
ACACCTG