Detailed information on CNT30180826


BLAST search results

BLAST vs Swiss-Prot:
sp|P07398|RBS3_WHEAT, E-value = 2e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30287807Secale cerealeTriticum aestivum41.6841.6492.86476forward
CNT30151238Secale cerealeBrachypodium distachyon27.2337.9784.89311forward

Expression of CNT30180826

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MVCPYIVGGVSTSKKAQGQLLIMGSVGALMIILSSTHCNKIDLHSQSLLVKYSYTCEPA*

>peptide 2 (55 aa)
MACIWVTSTCTLCLAGFLAAWWPEGNEADALHLAHVVEADDADIGNFHIVQYRPS*

>peptide 3 (53 aa)
MHLILPPLLTLLRPALPERRLTGRPAVDLSPWKGATVVADEAITAGAMAEYCT*

>peptide 4 (46 aa)
MNTIDQHLVLKERPSHKTKITPYGLSIHCGGGLHKQESSRAALDYG*

>peptide 5 (38 aa)
MHPPRPTLVGAYIHMLIYSHMGRTRSKTEIAELPTNVN*

Sequence

>CNT30180826
GCAAGACATAGGCATTTCCAGCCGCAAAGAAAGTAACATTTCCATCAATTGATGGCAAGACAATAATCCGCGCATTGCATATAATATATGTGTGTATTTA
TAGCCGGTGCTATAATTCTCTTATGCATCCTCCTCGGCCTACATTGGTAGGTGCTTACATACATATGCTCATATATTCACATATGGGTAGAACGAGAAGT
AAAACCGAGATAGCAGAGCTGCCGACAAATGTGAACTAACATGGCATGTATATGGGTTACTTCAACTTGCACTTTATGCCTTGCCGGATTCCTCGCAGCC
TGGTGGCCTGAAGGCAATGAAGCTGACGCACTGCACCTGGCGCATGTTGTCGAAGCCGATGACGCGGACATAGGCAACTTCCACATTGTCCAGTATCGAC
CGTCGTAGTACCCGGGGGAGTTGTTGTGCTCACGGAAGACGAAGCCAACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAGCGGATCAGGTAGTCGAC
CTGCTTCAGGAGGGCCTCCGTGGAGAGGGGTGGCAAGTAGGACAGGGTCTCGAACTTCTTGATGCCCTCAATTGGCCACACCTGAATAGATGGAATGAAC
ACAATTGATCAACACTTAGTGCTTAAAGAAAGACCTAGCCATAAGACAAAAATTACTCCTTATGGTCTGTCCATACATTGTGGGGGGGGTCTCCACAAGC
AAGAAAGCTCAAGGGCAGCTCTTGATTATGGGTAGTGTAGGGGCATTAATGATAATATTATCTAGTACACATTGCAATAAAATCGATTTGCATTCACAAA
GTTTATTAGTTAAGTATTCGTACACATGTGAACCTGCTTAGTGTTCGTCTTCCCTAGGAAAAATAATACTCTGCCTGATAGGAGTACGAAACAAGTGTTG
CGGTTTTGAACTAAAATTAGTGAGGAAGTAATTAGTTTTCATACCTGCATGCATCTGATCCTTCCGCCGTTGCTGACGCTGCTGAGGCCGGCGCTGCCGG
AGCGGCGGCTGACGGGGAGGCCGGCGGTCGACTTGAGCCCCTGGAAGGGCGCGACGGTGGTAGCGGACGAAGCCATCACGGCTGGGGCCATGGCGGAGTA
CTGTACGTGAATTGCTAGGTGGGGAGGCGATAGCTAGCTAGG