Detailed information on CNT3018062


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30309180Zea maysTriticum aestivum78.3976.2697.681857forward
CNT30400777Zea maysTriticum turgidum78.3957.3197.361857reverse complement
CNT30595147Zea maysEragrostis curvula73.4953.198.391741reverse complement

Expression of CNT3018062

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MMRRRHEGRAIRQVIMNHRIGGQSPRQPFI*

>peptide 2 (30 aa)
MRQRSRYGRAIQSIPPRWARRVCLRGRRPKV

>peptide 3 (30 aa)
MKFPKITRACRPRLYTRWIHQCSARAAQNI*

>peptide 4 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPINHYSDPEGQHNRTGIL*

>peptide 5 (49 aa)
MDFSRRRGRRTAPVAAIRTLHRTIQSVGATGGVYKGQGRSQRELMTRAY*

>peptide 6 (60 aa)
MPARAMGHGRRESAARQRGSSKQSRVQDNSCASVAATVGPSKASLRAGRGGSACEDGDRRS

>peptide 7 (63 aa)
VTRSRSVLFRGHGNDPSAGSPTETLLRLLLPLNDKVQWTSRDVGGGEPPPSPRSEHFTGPFNR*

>peptide 8 (91 aa)
MTTGRINQVARPRRRASAGLRAEASCRAGRRSFGRTDSWARDANASPAFSVSHIRDQKRQRGVLGAAGHRPTAARGKRRGRSRADEPHPGG*

>peptide 9 (50 aa)
MMLSHANVSRAMACFEHSNFFKVTAPEARPGQLRPGAHRRQKGRAGRFSP*

>peptide 10 (44 aa)
MRPSRKSGFVARISSRITTVIRVARTIKQTITDLMSHSQFHSSN*

>peptide 11 (43 aa)
MIRFNGLLATSGAANRPRRRDPNTSPDHSIGRSDGRCVQRAGT*

>peptide 12 (32 aa)
MKYECPRLSLLIITPIPKANTIGPESYDVIPC*

Sequence

>CNT3018062
CGGTGACTCGTTCGCGGTCTGTTTTGTTTAGGGGTCACGGCAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAA
TGATAAGGTTCAATGGACTTCTCGCGACGTCGGGGGCGGCGAACCGCCCCCGTCGCCGCGATCCGAACACTTCACCGGACCATTCAATCGGTAGGAGCGA
CGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGCATTCCTCGTTGAAGACCAACAATTGCAATGATCTAT
CCCCATCACGATGAAATTTCCCAAGATTACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGGATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATC
TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTAACTACGGAGGGATGGCTCCGCATAGCTA
GTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA
GCTCTCAGTCTGTCAATCCTTGCTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACGCCTGGTGGTGCCCTTCCGT
CAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCAGCGGGGTCCTATTAGTAACACCCGC
TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCA
AATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTATTAATCATTACTCCGAT
CCCGAAGGCCAACACAATAGGACCGGAATCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGATGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGT
AACGGCGCCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGCATCGCCGGCAGAAGGGTCGAGCCGGTCGGTTCTCGCCGTGAGGCGGACCGGCCGGC
CCGGCCCAAGGTCCAACTACGAGCTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCC
AATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACACTAACGCGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGG
ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCA
CCATGGTAGGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCACGAAGGCCGTGCGATCCGTCAAGTTATCATGA
ATCATCGGATCGGCGGGCAGAGCCCGCGTCAGCCTTTTATCTAATAAATGCGCCCCTCCCGGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTAC
TACGGTTATCCGAGTAGCACGTACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTTCGAATTAGTTCATACTTGCACATGCA
TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTAGCACGTCCTCGCAGACGGGCCAGCGCCGGCCTCCGCGCGGAGGCGTCGT
GCCGGGCTGGCCGTCGTTCATTCGGGCGGACCGATTCTTGGGCGCGTGACGCCAACGCGTCTCCGGCCTTCAGCGTGAGCCACATCCGAGACCAAAAGCG
CCAGCGAGGTGTCCTCGGTGCCGCCGGCCATAGGCCGACGGCGGCACGAGGCAAACGCCGCGGGCGCTCTCGAGCCGACGAGCCGCACCCCGGGGGGTGA
GCTCGACGAAGGCAACGTGTATCGAGCACGGCTTCCCGTGGGACGGGTAGCAGCACGCAAGCACTTCTCAACGCAGCAGGCACAGGATGCCCGCACGAGC
GATGGGACACGGGCGCCGGGAGTCGGCCGCACGGCAGCGGGGGTCCTCCAAGCAGTCACGGGTCCAAGACAACTCATGCGCCAGCGTAGCCGCTACGGTC
GGGCCATCCAAAGCATCCCTCCGCGCTGGGCGCGGCGGGTCTGCTTGCGAGGACGGCGACCGAAGGTCC