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Detailed information on CNT30180424


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 6e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524561Secale cerealeSetaria italica22.5712.5388.36146forward
CNT30533654Secale cerealeEucalyptus grandis18.2424.0887.29118forward
CNT30221624Secale cerealeHordeum vulgare53.4851.0392.49346forward
CNT30387746Secale cerealeTriticum turgidum55.3362.0594.13358forward
CNT30247726Secale cerealeAvena sativa31.5329.2391.18204forward
CNT30467515Secale cerealeSaccharum spontaneum22.5719.8487.67146forward
CNT30135597Secale cerealeLolium perenne22.7228.4396.6147forward
CNT307034Secale cerealeZea mays22.5718.589.04146forward
CNT30346089Secale cerealeEragrostis tef21.4824.7389.21139forward
CNT30597257Secale cerealeOryza meridionalis22.5729.2692.47146forward
CNT30371492Secale cerealeOryza glumipatula22.5727.1991.78146forward
CNT30108688Secale cerealeOryza longistaminata22.5726.0292.47146forward
CNT30104475Secale cerealeOryza rufipogon22.5725.9892.47146forward
CNT30578401Secale cerealeOryza barthii22.5726.1292.47146forward
CNT30581754Secale cerealeEchinochloa crusgalli22.5719.0887.67146forward
CNT30118085Secale cerealeOryza nivara22.5727.3492.47146forward

Expression of CNT30180424

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MCYRGAFTVSLVDHGHLLEAHFNMVIYGAPSWLVLFPMLFFFANQTDTMKNDCCYIWSG

>peptide 2 (48 aa)
MIYDVNSPLFRSFLSQKGGASSDKRKMEEQKPKDQRFKANENKPVMNE*

Sequence

>CNT30180424
TGTAGATCCGCGAAGGTGAGAGTACAAAGCAGAGCCTCTGGAAGATTGGAACGCGTGCGTCTCACCCTCTCCCACGAACCCTAGCTAGCCTCTCCACATC
GGCGGCGGCGAAGAAGAAGAAGAAGAGAAGAAGAAGAAAGATGATCTACGACGTGAACTCCCCCCTGTTCCGCTCCTTCCTCAGCCAGAAGGGCGGCGCG
TCCTCCGACAAGAGGAAAATGGAAGAGCAGAAGCCGAAGGACCAGAGGTTCAAGGCCAACGAGAACAAGCCTGTGATGAACGAATGAGAGTCGCCTGGAC
AGTCCGGTGCCTGCAAGGCCTAGCTGCCAATCATGTGACTCCTATGTTAAAATGAGTGGTGAACATTTGCTTGGCCGTCTCAGAACTGTCCAAGTATCCA
GTACTGTGTTTTAATTTCTATATCTGAACTGCATGCCTGGAATGATAAATTAGGAGATTGTATCTTGTGATGTGTTATCGTGGAGCATTCACAGTATCCC
TGGTGGATCATGGCCATCTTTTGGAAGCCCACTTCAATATGGTGATATATGGAGCACCTTCTTGGCTTGTGCTATTTCCCATGCTTTTTTTCTTTGCGAA
TCAAACTGACACGATGAAGAATGACTGTTGTTACATCTGGTCTGGCC