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Detailed information on CNT30180392


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 2e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555688Secale cerealeOryza glaberrima14.7535.9785.51214forward
CNT30258042Secale cerealeAvena sativa20.5458.5587.25298forward
CNT30597252Secale cerealeOryza meridionalis19.7162.8684.62286forward
CNT30104436Secale cerealeOryza rufipogon19.2351.184.95279forward

Expression of CNT30180392

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MNRMRRCSTLGAKSINCINDARKICRQKKNCSLWAGLICIVGLSTMKKA*

>peptide 2 (31 aa)
MHLILPPLLTLPRPALLERRLTGRPPVDLRP*

>peptide 3 (57 aa)
MCMCVAGARIYICMLHNLCSYIHRTYRTKNMLWSESRVVHKSEVHKRPSYIGHCFNL*

>peptide 4 (29 aa)
MGRSHMHCWVVHNEESLRVALKLMGTLEA*

>peptide 5 (30 aa)
MHAPQPMFVHTQNIQNEKYALVGKQSRAQK*

Sequence

>CNT30180392
GCTTTTCCTTCAATCAACAGCAAGACAATTGTCTGCTTATTGTATATAATAAATATGTATGTGTATGTGTGTAGCCGGTGCTAGAATTTACATATGCATG
CTCCACAACCTATGTTCGTACATACACAGAACATACAGAACGAAAAATATGCTCTGGTCGGAAAGCAGAGTCGTGCACAAAAGTGAAGTTCACAAAAGAC
CTTCATACATAGGCCATTGTTTCAACTTGTAGTTTAGGCCTTGCCCGACTCCTCGCAACCCGGTGGCCTGAAGGCGATGAAGCTGACGCACTGCACCTGG
CGCATGTTGTCGAAGCCGATGACGCGGACATAGGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGAGCACCTGTGTGGCGTCGGTGCACCCGA
ACATAGGCAGGGCACCCACTTTGAGCGGATCAAGTAGTCGACCTGCTTCAGGAGGGCCTCTGTGGAGAGGGGTGGCAAGTAAGACAGGGTCTCAAACTTC
TTGATGCCCTCAATTGGCCACACCTGAATGAATAGAATGCGCAGATGCTCAACACTTGGTGCTAAGTCAATTAATTGTATCAATGATGCTAGAAAAATCT
GTCGACAAAAGAAAAATTGCTCCTTATGGGCAGGTCTCATATGCATTGTTGGGTTGTCCACAATGAAGAAAGCTTAAGGGTAGCCCTTAAACTGATGGGC
ACTCTGGAGGCATGATGATAATACTTCCTCTGTTCACTATTATAAGATGTTTTGGATATTTCAATATAGACTAGATATAGACTGTAATGAGTAAACAAAC
ACACTAAAACACGTTTATATACATCCGATTCAGAAAAATATTACAACATCTTATAATAGTGAACGGAGGGAGTATTATCTAGTCCACACTGCAACAAAAA
GTAATTTCCATTCACTAAGTTATGAGTTGATTGCTTTTACTCACGGATCCCAGCTTATGGACAAGGCTAAATGAGCATCCAAAAACCAAATGGTTTCCAT
ACGCAACCAAACAAACAGATAATCTATTGACCACATTATGTTGTACTCCCTCCGTCCCAAAATAATTGAACTCTAGTACAATTTCGTACTATGTTACACT
AAAATTGAGACACTTATTTTGGGACAGAGGGAGTACTTAATTCTAGTATATGGGTCCTATTTTAAGGATGGGTTTGGTTATATCTATTGGGGGTGTTCTG
TAAGTGAATTACTTGTACTGAGTCACTGACGAAGAAACTCGTCAGTTTAATTAGTGCCTGACATACCTGCATGCACCTGATCCTTCCGCCGTTGCTGACG
CTGCCGAGGCCGGCGCTGCTGGAGCGGCGGCTGACGGGCAGGCCCCCGGTGGACTTGAGACCTTGAAAGGGTGCGACAGAGGTGGCCGAGGAAGCCATCA
CAGTGGGGGCCATGGCGTTGGAGGAGAGAAGGTAGCAGGCTACGCTTGAGG