Detailed information on CNT30180353


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524257Secale cerealeSetaria italica38.443.6385.71154forward
CNT30150913Secale cerealeBrachypodium distachyon20.9521.6586.984forward

Expression of CNT30180353

Peptides detected in this lncRNA

>peptide 1 (55 aa)
YSERTCLVARIRSLLRFTLASTMSRMAGPPGCAIQNTEFQSSMPSGLKASSRARP*

>peptide 2 (62 aa)
MAPSESGRIVWLADTSWNRGRSTDTSGSAPMITAAAPSPKSACPTSESRWDSCGPRKVTAVIS

>peptide 3 (51 aa)
VLGEDMPGRAHPLLVEVYLGLHHVQDGRAAWVRYPEHGVPVVDAQRLEGLL*

Sequence

>CNT30180353
CGTACTCGGAGAGGACATGCCTGGTCGCGCGCATCCGCTCCTTGTTGAGGTTTACCTTGGCCTCCACCATGTCCAGGATGGCCGGGCCGCCTGGGTGCGC
TATCCAGAACACGGAGTTCCAGTCGTCGATGCCCAGCGGCTTGAAGGCCTCCTCTAGGGCACGTCCTTGAGGAGGTGGAAGGTGAGGCCGACCTCCCGGA
GGTGGCCGTCGATGGCGCCCTCCGAGTCCGGCAGGATCGTCTGGCTCGCGGACACCAGCTGGAACAGGGGACGCTCCACGGACACGTCGGGGTCGGCGCC
GATGATCACGGCGGCCGCGCCGTCGCCGAAGAGCGCCTGTCCTACCAGCGAGTCGAGGTGGGATTCGTGCGGGCCACGGAAGGTGACCGCGGTGATCTCG
G