Detailed information on CNT30180337


BLAST search results

BLAST vs Swiss-Prot:
sp|P00871|RBS1_WHEAT, E-value = 4e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672589Secale cerealeSetaria viridis18.7733.6782.16269forward
CNT30555545Secale cerealeOryza glaberrima19.4733.7487.1279forward
CNT30151009Secale cerealeBrachypodium distachyon20.6657.8191.22296forward
CNT30578501Secale cerealeOryza barthii19.4724.8787.1279forward
CNT30118025Secale cerealeOryza nivara19.4724.1186.38279forward

Expression of CNT30180337

Peptides detected in this lncRNA

>peptide 1 (31 aa)
PTSCETYPLPCQIKKLFHELITARQWSACCI*

>peptide 2 (42 aa)
MHLILPPLLTLLRPAVDLSPWKGATVVADEAITAGAMAEYCT*

>peptide 3 (46 aa)
MNTIDQHLVLKERPSHKTKITPYGLSIHCGGGLHKQESSRAALDYG*

>peptide 4 (57 aa)
MWNLRMHAQEPMFIHAYTNPIEQKVCSGRKAESCSRVMDKSEVHKRTSYEIGNCFNS*

>peptide 5 (59 aa)
MVCPYIVGGVSTSKKAQGQLLIMGSVGALMIILSSTHCNKIDLHSQSLLVKYSYTCEPA*

Sequence

>CNT30180337
CCCACTAGTTGTGAGACATATCCATTGCCGTGCCAAATAAAAAAACTTTTCCATGAATTAATAACAGCAAGACAATGGTCCGCGTGTTGTATATAATAAA
TATTACAGGTTTTGCATATGTGTAGCCCGTGCTTATAGACCTATGTGGAATTTACGTATGCATGCTCAAGAACCTATGTTCATACATGCATACACAAATC
CTATAGAACAAAAAGTATGCTCCGGTCGGAAAGCAGAGTCCTGCAGCAGAGTCATGGACAAAAGTGAAGTTCACAAAAGAACTTCATACGAAATAGGCAA
TTGTTTCAACTCGTAGTTTATGCCTTGCCGGACTCCTCGCAACCCGGTGGCCTGAAGGCGATGAAGCTGACGCACTGCACCTGGCGCAGGTTGTCGAAGC
CGATGACACGGACATAGGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGAGCACCTGCGTGGCGTCGGTGCACCCGAACATAGGCAGCTTCCA
CATTGTCCAGTATCGACCGTCGTAGTACCCGGGGGAGCTGTTGTGCTCACGGAAGACGAAGCCAACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAG
CGGATCAGGGTACTCCTTCTTGACCTCCTCCACCTCATTGAGCACCTGCGTGGCGTCGGTGCACCCGAACATAGGCAACTTCCACATTGTCCAGTATCGA
CCGTCGTAGTACCCGGGGGAGTTGTTGTGCTCACGGAAGACGAAGCCAACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAGCGGATCAGGGTCTCGA
ACTTCTTGATGCCCTCAATTGGCCACACCTGAATAGATGGAATGAACACAATTGATCAACACTTAGTGCTTAAAGAAAGACCTAGCCATAAGACAAAAAT
TACTCCTTATGGTCTGTCCATACATTGTGGGGGGGGTCTCCACAAGCAAGAAAGCTCAAGGGCAGCTCTTGATTATGGGTAGTGTAGGGGCATTAATGAT
AATATTATCTAGTACACATTGCAATAAAATCGATTTGCATTCACAAAGTTTATTAGTTAAGTATTCGTACACATGTGAACCTGCTTAGTGTTCGTCTTCC
CTAGGAAAAATAATACTCTGCCTGATAGGAGTACGAAACAAGTGTTGCGGTTTTGAACTAAAATTAGTGAGGAAGTAATTAGTTTTCATACCTGCATGCA
TCTGATCCTTCCGCCGTTGCTGACGCTGCTGAGGCCGGCGGTCGACTTGAGCCCCTGGAAGGGCGCGACGGTGGTAGCGGACGAAGCCATCACGGCTGGG
GCCATGGCGGAGTACTGTACGTGAATTGCTAGGTGGGGAGGCGATAGCTAGCTAGGCCACACTTGACTTGAGCCCTCCTCAGGCCGCTCCAGTATATATC
AGCGCATGCGCGGCGCCGCTCCTTTCCAACAAG