Detailed information on CNT3018014


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENW2|YCF3_SACOF, E-value = 3e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30556045Zea maysOryza glaberrima84.6168.290.522226forward
CNT30606803Zea maysGossypium raimondii4.9445.9485.38130forward
CNT30362312Zea maysSorghum bicolor11.8610095.51312reverse complement

Expression of CNT3018014

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MKRNFSIQSNRAMEFPSRCGCTCTAGIRKLAIHSVYFP*

>peptide 2 (35 aa)
MYLLLLFQSLSLLFILMKYDIKLKVEERDIMKFLI*

>peptide 3 (35 aa)
MDRRGLVFFQEISSQPSPKRFFLTPMNYINARGKR*

>peptide 4 (31 aa)
MDKRDMDFPLSSNCLLFLLFGQEEKRYEIFD*

>peptide 5 (43 aa)
MRFHLIRLLPSIHSTKRKIYRIKIELVPSHYGPKGAGIFPRNL*

>peptide 6 (44 aa)
MKYLTKTGFHSTFLFLNNNFPHQLFRVFKVINCPIPLLYLDCMA*

>peptide 7 (51 aa)
MLEENDSSKNFFVLNASYLEELATSTTFDGYKGIQSTNLMVVCYPNHSSQP*

Sequence

>CNT3018014
TTTTTTTTTTAGTTATTCACTGGAGCAATTATATATTGAAGTCAATCCGAGGCAAGTGTTCGGATCTATTATGACATAAGGATTAGGTGCCTACGGACAT
TGGTTATTCTGGAAAATTATTTCCCGACATAACAAAAAAATCTTTTTTTACGTTTTAATTTAAGAAGCTGGTGTATTTTTTTTCTGAGGGTATAAGCCCC
TATCTACATCTACTTTCCTTGAGTGAGCATAATATAGATTTTTTGATTCGATTCAAAATTCCAAGATAACTCATTAGAATTATTAATAAGACCGTCCTGA
TATATTAGGTAGGAATATTTAGATTGCCGATTTTTATGTACTTATTACTTCTGTTCCAGAGCCTATCCCTATTGTTTATCCTTATGAAATATGATATAAA
ATTGAAGGTAGAAGAAAGGGATATAATGAAATTCTTGATTTGATTTTCAACCAAACCACCCTTTTTATGAAAATGGAGAGTGGTCTTATTCAAATTCAAA
GCGCTTCGTAATCTTTAACCAGTTCTGTGCTTCAATATAATTTCCTGGAGTAAGCGCTATAGCTTGTTTCCAATACTCAGCAGCTTGATCAAACCAAGCT
TCCGCAATTTCCGAATCGCCCTGTAGAATGGCCTATAGTCGCACGTAATGACAGATCACGGCCATATTATTAAAAGCTTGCGGTAAGAAGGGGTTTCGTT
CTAGCGCCCGGAAATAATATTCCAAAGCCTTTGTATGCTCTCCATTGCTTGTGTGTATAAGGCCTATGTTATATAGTATATAACTTCGATCATAGGGATC
ATTTCTAGTCGCGTAGCTTCATAATAATTCTGCAAAGCTTCCGCATAATTCCTTCGGATTGAGCCAACATCCGTTACGGTCGTTCATTCTATTCAAAAAA
TCTCCGTTCCAAAACCGTACATGAGGTTTCATCTCATACGGCTTCTCCCTTCTATACATAGTACTAAGCGAAAAATCTATAGAATAAAAATCGAATTAGT
CCCATCTCATTATGGACCGAAGGGGGCTGGTATTTTTCCAAGAAATCTCTAGCCAACCTTCCCCCAAGAGGTTTTTCTTAACACCAATGAATTATATTAA
TGCTAGAGGAAAACGATAGCTCCAAGAATTTCTTTGTTCTCAACGCCTCCTATTTAGAGGAATTAGCCACTTCAACGACCTTTGATGGTTATAAGGGTAT
CCAAAGTACAAACCTGATGGTTGTTTGTTATCCCAACCATTCTTCCCAACCCTGATACCAATCAGGAAAGGGCTAATTTCTAACAAAGTTTTTCTCTTGT
TGATTCCTATTTCGTGGTGTAGTGCTTTTCTCCCCTATGCTGCCTATTGGTACTAGTAGAGTCGGATTGCCCTGTAATACAGAACCTATCCTGTAGGTGT
AACCTTTCGCTCAATACTCAAATCTACAATTGAAGCATCTGAGGCCACATCAATCGAGGATACACGACAGAAGGAATTGTTAGTTCACCTCACCTTCCCC
AAGCGCGGGTTTCCTTTACTAATTTTGTTCTCTCTATGCGAACCCTCTCTCTTTCTCGTAAGAATGAGATATAGGTAGGGCTAAAAAAAAAAGAGTCAAA
TCGCGCACCATCTCTATAATAAGTAAATGCCCTTTTTCCCCGGAGGTTGTCGGAATTATTTGCAATAAAATATTGGCTACAATCGAGGAGGTCTTATCAA
TGAAATTTCCATTTATACGGGATCTAGGCATAATTCCCAACCCATTCTATATAGAATTCTTTCATTCTATCACAAAATAACATAAAAACAAAACATTCGA
TTCTTATAAATCGATCCATATGCTCTAAATGGATAAGAGAGATATGGATTTTCCGCTCAGCTCAAATTGTCTCCTTTTCCTTCTGTTTGGACAAGAAGAG
AAGAGATATGAAATATTTGACTAAGACTGGATTTCATTCCACTTTCCTATTTCTCAACAACAACTTCCCTCATCAGCTATTTCGCGTTTTCAAAGTCATT
AATTGCCCCATACCCCTTTTATATTTAGATTGTATGGCGTAATGTACCTTATGCAAATGGAATTCTAGGGTTCCTTTATTTTCTTATGGAATAAGAAGAA
TTCTTCCATTCTCTTTTTATTTTGGTTTTCCCCAAAGAAAAACTTTTCGAGGGAGCAGAATTCCTAGTAAAAAAATACAGGATCCTTCCACTTAGATGAA
AAGGAATTTTTCCATCCAATCCAATAGAGCCATGGAATTCCCGAGCCGTTGTGGCTGTACCTGTACTGCAGGAATACGAAAACTCGCTATTCACTCAGTT
TATTTTCCATAATAAGATTATGTAGGAGAGATGGCCGAGCGGTTCAAGGCGTAGCATTGGAACTGCTATGTAGACTTTTGTTTACCGAGGGTTCGAATCC
CTCTCTTTCCGTTTCTCTTAATTCATCAATGTTAGCGATCACAATGTATCAAATTAAATAACAATTTATTCCAACAATAATACCTTTAATTAATAGAAAT
TCTCTATAGCAAATTACTGTGGTATGTAAAATACACATCGAGGAAATAACAAAAAAGAAAAAAGTATCCTAGGGTTAATCTATTTCTGCTAGGTGAACGG
GAAAATACGAATTAAGAGCCTTAGGTCGATT