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Detailed information on CNT30180108


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 2e-65

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692288Secale cerealeOryza sativa99.0943.9391.71217forward
CNT30671877Secale cerealeSetaria viridis84.029293.48184forward
CNT30520655Secale cerealeSetaria italica92.2481.4592.08202forward
CNT30289434Secale cerealeTriticum aestivum91.7834.7293.03201forward
CNT30221546Secale cerealeHordeum vulgare95.4391.6794.26209forward
CNT30392320Secale cerealeTriticum turgidum88.589788.66194forward
CNT30554471Secale cerealeOryza glaberrima93.1537.0292.65204forward
CNT30436341Secale cerealeAegilops tauschii74.8953.9592.07164forward
CNT30251924Secale cerealeAvena sativa93.1537.593.14204forward
CNT30658643Secale cerealeTriticum dicoccoides90.8744.9291.46199forward
CNT30444735Secale cerealeSaccharum spontaneum99.093891.71217forward
CNT30681546Secale cerealeTriticum urartu93.1593.1593.63204forward
CNT30721558Secale cerealeTriticum spelta92.2490.1889.11202forward
CNT30341741Secale cerealeEragrostis tef89.532.3489.8196forward
CNT30361377Secale cerealeSorghum bicolor94.5218.3890.34207forward
CNT30596654Secale cerealeOryza meridionalis94.9828.6193.27208forward
CNT30370660Secale cerealeOryza glumipatula93.1535.5492.65204forward
CNT30104991Secale cerealeOryza longistaminata92.2485.2391.58202forward
CNT30148227Secale cerealeBrachypodium distachyon76.7166.6789.88168forward
CNT30102628Secale cerealeOryza rufipogon93.1516.0892.65204forward
CNT30576982Secale cerealeOryza barthii10032.5491.78219forward
CNT30496422Secale cerealeDigitaria exilis93.1533.0689.22204forward
CNT30117165Secale cerealeOryza nivara93.1545.5492.65204forward
CNT30593977Secale cerealeEragrostis curvula87.2186.0491.1191forward
CNT30604388Secale cerealeOryza punctata64.3842.4792.2141forward
CNT30556620Secale cerealePanicum hallii10022.2694.06219forward
CNT30551356Secale cerealeOryza brachyantha65.7541.6292.36144forward

Expression of CNT30180108

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLLTMRMQRKPLPTSLLSVHSTDSSRYSGL

>peptide 2 (39 aa)
YTMGRSSSAGCRPCTTPRARPRCRRGRRRDPCRRGARRS*

>peptide 3 (29 aa)
LHHGTIFQRWLSPLHHSQSTTSVPSWTPP*

>peptide 4 (72 aa)
LTPWDDLPALVVALAPLPEHDLGAVVDAAVILVAVERVEVEVDVVDHADAAEALAHVVALRPQHRLVQVLRVV

Sequence

>CNT30180108
CTTACACCATGGGACGATCTTCCAGCGCTGGTTGTCGCCCTTGCACCACTCCCAGAGCACGACCTCGGTGCCGTCGTGGACGCCGCCGTGATCCTTGTCG
CCGTGGAGCGCGTCGAAGTTGAGGTAGATGTTGTTGACCATGCGGATGCAGCGGAAGCCCTTGCCCACGTCGTTGCTCTCCGTCCACAGCACCGACTCGT
CCAGGTACTCCGGGTTGTA