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Detailed information on CNT30179912


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000296, E-value = 6e-132

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678565Secale cerealeSetaria viridis18.4234.290.45314forward
CNT30521912Secale cerealeSetaria italica20.47101.4587.97349reverse complement
CNT30508142Secale cerealeNicotiana attenuata8.9735.0188.89153reverse complement
CNT30301056Secale cerealeTriticum aestivum46.1659.3599.11787forward
CNT30222903Secale cerealeHordeum vulgare11.8570.8898.51202forward
CNT30401480Secale cerealeTriticum turgidum22.1752.4399.21378reverse complement
CNT30660677Secale cerealeTriticum dicoccoides17.7722.7198.68303forward
CNT3017991Secale cerealeZea mays45.9815.7392.98784forward
CNT30232563Secale cerealeAnanas comosus28.2714.0788.59482forward
CNT30689283Secale cerealeTriticum urartu46.0430.9499.49785forward

Expression of CNT30179912

Peptides detected in this lncRNA

>peptide 1 (32 aa)
FFKSKKFLFFIHRSSIRHWLKKGRVPPFFSSK*

Sequence

>CNT30179912
TTCTTCAAATCCAAAAAATTTCTCTTTTTTATACATAGGTCGTCGATTCGGCATTGGTTAAAAAAGGGCAGGGTGCCCCCTTTTTTTTCTAGTAAATAGT
TCAAACCATTTTATCGATATGAGTGTTCTATATCAGATAAATTTGCCATTAGCTATTTCCCGTTTAAATTCGGTACTAATACTAATATAGTTGTAGAAAG
AGTACCTCTTTTTGCCTGGACTTCAAGCAGTTTAGCTTTAACCGTGTTAATGGTCTCACATTCTTGGTTTATAGAGAATCAAAGTTGATTTACCAATGAG
TCGCGAAATGCTATGGTTCTTCCATATGATTTCTGAATTTATTCAGAAGTAATTCGTCGAGATCGTGCACCCTTTTCTTATTTATCCGAAAAATACTAAA
AAATATTATAAATGCAGCCGGATAGATCCAATCTATTCTTGAAATAGACAACTCGCACACACTCCCTTTCCAAAAAAAATCAAAACACCAACCACTACAG
TTAGATTTATTAGATTTGTTGCTAAAATATCGGTATTAAGCCCGAAACTGCCAGCGGATGGCCAGTGAGCTAAAAAAACGAAAGAATGGGTTACATTTTT
CATATGCTCTCCTCTTATAGATAGGACGAACAAAGAACAAAGTTTTTCGATCACTTACTTCGCTCGCCCTTTTTTGATCGGTTTTTTTAATGCAAATAGA
TTCAATCTAGTAATTTCTTTTAGATTAAGTCTTACGTCTTGTTTGACCGGTGAAAGACTTCCTTTGTTGAAATGTTCTGTTCCCAAAATTCCTAAAATAA
AAGGAAAAAACTTTCCACTTTCCTAAACTAAGGACGGGAAATAAGAAGGTGAGCATATCTTCTGAATTAATACAGAAGTAATTCGTCGAGATCGTGCACC
CTTTTCTTATTTATCCGAAAAATACTAAAAAATATTATAAAGTGCAGCCGGATAGATCCAATCTATTCTTGAAATAGACAACTCGCACACACTCCCTTTC
CAAAAAAAATCAAAACACCAACCACTACAGTTAGATTTATTAGATTTGTTGCTAAAATATCGGTATTAAGCCCGAAACTGCCAGCGGATGGCCAGTGAGC
TAAAAAAACGAAAGAATGGGTTACATTTTTCATATGCTCTCCTCTTATAGATAGGACGAACAAAGAACAAAGTTTTTCGATCACTTACTTCGCTCGCCCT
TTTTTGATCGGTTTTTTTAATGCAAATAGATTCAATCTAGTAATTTCTTTTAGATTAAGTCTTACCTCTTGTTGCCTGGACTTCAAGCAGTTTAGCTTTA
ACCGTGTTAATGGTCTCACATTCTTGGTTTATAGAGAATCAAAGTTGATTTACCAATGAGTCGCGAAATGCTATGGTTCTTCCATATGATTTCTGAATTT
ATTCAGAAGTAATTCGTCGAGATCGTGCACCCTTTTCTTATTTATCCGAAAAATACTAAAAAATATTATAAAGTGCAGCCGGATAGATCCAATCTATTCT
TGAAATAGACAACTCGCACACACTCCCTTTCCAAAAAAAATCAAAACACCAACCACTACAGTTAGATTTATTAGATTTGTTGCTAAAATATCGGTATTAA
GCCCGAAACTGCCAGCGGATGGCCAGTGAGCTAAAAAAACGAAAGAATGGGTTACATTTTTCATATGCTCTCCTCTTATAGATAGGACGAACAAAGAACA
AAGTT