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Detailed information on CNT3017990


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3A3|ATPI_SACHY, E-value = 6e-144

BLAST vs NONCODE:
NONATHT002192, E-value = 2e-112

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317837Zea maysCorylus avellana13.5442.5986.61448forward
CNT30282912Zea maysChenopodium quinoa16.550.9385.16546forward
CNT3021394Zea maysCitrullus lanatus18.7498.8890.48620forward
CNT30198301Zea maysPisum sativum16.4426.1788.6544forward
CNT30486613Zea maysOlea europaea2.324.3686.8476forward
CNT30505351Zea maysNicotiana attenuata22.6421.5588.79749forward
CNT30291829Zea maysTriticum aestivum35.6929.9692.461181forward
CNT30226738Zea maysHordeum vulgare10.3426.2396.49342forward
CNT30541450Zea maysBrassica napus21.3425.1285.84706forward
CNT30238613Zea maysBrassica oleracea9.3159.3480.52308forward
CNT30511101Zea maysSolanum lycopersicum21.5558.3985.97713forward
CNT30172770Zea maysTrifolium pratense13.3986.8685.33443forward
CNT30145240Zea maysMedicago truncatula5.1430.5890.59170forward
CNT30598585Zea maysFraxinus excelsior15.6560.7386.49518forward
CNT30232563Zea maysAnanas comosus29.528.4990.68976forward
CNT30205079Zea maysHelianthus annuus16.4775.3885.14545forward
CNT30626489Zea maysDaucus carota6.2923.7291.35208forward
CNT30621081Zea maysCajanus cajan14.0244.4483.19464forward
CNT30409854Zea maysPapaver somniferum16.7783.7185.05555forward
CNT3057337Zea maysAmborella trichopoda24.6621.8982.6816forward
CNT30726491Zea maysLupinus angustifolius21.3160.5287.09705forward

Expression of CNT3017990

Peptides detected in this lncRNA

>peptide 1 (39 aa)
APRMPILARIVRKCNSVFKQLFRVPRAPCTACWKTRCRT*

>peptide 2 (31 aa)
MNWAKLKKERLFQKLVNSMMTFHGFTYIGCG*

>peptide 3 (57 aa)
MTGIGTTKGTKETRTTTTNSSANIFPKSRKLSDNGFVKSSRMLIGKRIGVGLIYFSK*

Sequence

>CNT3017990
GGCCCCGAGAATGCCAATATTAGCACGAATCGTACGGAAATGTAACTCGGTATTCAAACAACTATTCAGAGTTCCTAGAGCTCCTTGTACAGCTTGTTGG
AAAACCCGTTGTCGGACCTGATTCATCGCCCTTTGTTTTTCAAAATAAAGGGTTTCGTTTTTAGACTTTTCTAATTGTTCCAAACTAATAGAAGTAGCAT
TAATCAAATTTTCTTTTTCTCGTTCTATTTCAGAGTATCCATTCATTCGATACTCATCTGCTTCCAGTTCGACTTTCTGTAATCGAATACGAGCTTTTTC
GAGTTGTTCAAGGGTCCCTTTACGCAATTCTTCCGAATTTCGAATAGTACTTAAAATCCTCTGTTTTCGATTATCTAATAAATCTTTTAACACTCCCTTT
CCAAAAAAAATCAATACACCAACCACTACAGTTAGATTTATTAGATTTGTTGCTAAAATATCGGTATTAAGCCCGAAACTCCCAGCGAATGGCCAGTGAG
CTAAAAAAACAAAAGAATGGGTTACATTTTTCATATGCTCTCCTCTTATAGATAGGACGAACAAAGAAGAAAGTTTTTCGATTACTTACTTCGCTCGTCC
TTTTTTGATCGGTTTTTTTAATGCAAATAGATTCAATCTAATAATTTCTTTTAGATTAAGTCTTAGGTCTCGTTTGACCTGTGAAAGATCTCCTTTGTTG
AAATGTTCCCAAAATTCCTAAAATAAAAGGAAAAATACTTTCCACTGTCCTAAACTAAGGACGGGAAGGAAGAGGGCGAGCATATCCTCTAAATTGATCA
TGCTCAAATCAGCCCTTCTTGGGGTTCCTAGGGTATTGTCTGTCCCGATAAATACAAAATTTCCGGAATAATATAAAAAAGAAATAATATAATAAATAGG
AGTAAAGTAAAGTATTGATATACTTAGAATTACATAAGCAAATGCCAATGTACTAAAAAAAGAAAAAAGTATCTAATCTAAAGGACTCATTTTCTTTTTT
AGGATTAAACAAAAGGGTTCGCAAATAAAAGCGCTAGTGCCACAACCAGTCCATAAATTGTTAAAGCTTCCATAAAAGCTAGACTAAGCAATAAAGTACC
TCTTATTTTACCTTCTGCTTCTGGCTGTCTCGCAATACCTTCTACAGCTTGTCCTGCAGCAGTACCTTGACCAACTCCGGGCCCAATAGAAGCAAGCCCT
ACGGCCAATCCAGCAGCAATAACGGAAGCAGCAGCAATTAGTGGATTCATGATGAGTTCCTCGTGTCAAAAAAAAAGAAATGGTTAAGGATACAATCAAC
CAAGAAATTATTACTTCCAACTTCTAAGCTCTATCGGGTAGAAGTAACTAATAAGTACAAATAAATGATAATCGAAATCGTTCGAATTACTTCGAGATCT
CGTTTTTAGTTTCTAATCATTAGAGGTTTGTGTAAATCCATATGATTCTCATTATTCTATTTCTCTTTCTTTTCAACCAATCACTCTTTTATTCCATCCT
TTTTTTTACTCTTCGATATCTTTGAGTTCCCATTTTTTCCCCTTCATCTAACATAATAAAAGACGAAATACAGGAAGAACCCCTATTGAAATCGAACTAA
TCCAAATCCAATAGGAATCAAATCAAGATATACAATTGATAACAATATGCTGCATAGAACTAGATATGGAATCCAGTTCCATATAGAAGGGAATTCTATA
TATCGGATTAGATAATGAATCTAACTTAGGAATAAAAAAAATCCCATATACATTTGTTTCTTCTATTTTGTTTGCCTATTTTCTCATTTTCTATTGAATC
CGATTCTAAAATCATTCTTTAGAAAGCCACACAAAAGATGACTGTCTTATAGGCATTAAAGATATAGATCTAACCTGACTTGGCCCCCTGAATGCATATA
TACTTTACCTCTTCCATAATATAGTCTATTCTCTCTCCTACAACTCTAGGTTGTATATTCATACGCCTTTCGAACTATTTAGTTTTCCAACTAAGAGGAT
TATCCGGAATCATGCATGAATTGGGCTAAGCTAAAAAAAGAAAGACTATTTCAAAAACTAGTTAATTCAATGATGACCTTCCATGGATTCACCTATATAG
GCTGCGGCTAACGTTGCAAAAATAAGAGCTTGAATACCGCTTGTAAATAATCCAAGAAACATGACCGGTATAGGGACTACTAAGGGGACTAAAGAAACAA
GAACAACAACGACTAATTCATCCGCCAATATATTTCCGAAAAGTCGAAAACTAAGTGATAATGGTTTTGTGAAATCTTCTAGGATGTTAATAGGTAAAAG
GATTGGGGTTGGTTTAATATATTTTTCGAAATAACTCAATCCTTTTTTGCTAAGACCCGCATAAAAATATGCCGCTGATGTTAGTAAAGCTAAAGCAACA
GTAGTATTTATATCATTCGTGGGCGCTGCTAATTCCCCATGGGGTAACTCTATAATTTTCCAAGGTAAAAGAGCACCTGACCAATTCGAAACAAAAATAA
AAAGGAACATAGTTCCAATAAAGGGAACCCAGGGACCATATTCTTCTCCAATCTGAGTTTTGCTCAAGTCTCGAATAAACTCAAGGACATATTCGAAGAA
ATTCTGACCATCGGTCGGGATGGTTTGTGGATTCCGAACAGCTATGATAACTGAACCTAGCAAAATAGTAATTACGACCCAAGAAGTGATGAGTACTTGG
GCATGAATTTGGAAACCTCCTATTTGCCAATAGAAGTGTTGCCCTACTTCTACACCCGATATATCATATAACCCCTTGAGTGTTTTAATGGAACATGGTG
TAATATTCATATTGTCCTCTGATAAAAATTGAACTTCAAAAAAGGAATTCTTTTGATTCAAGCATCTCTTTCTCAACTCAGCAACTTGAAGTATTAATCT
TATATTTAATATACCAAGAAATCACATCAGATCATAATATATATCAATACCCTCTAATATATATCAATATTTCCCTTCTTTTATCTATGCAAAACAAAAA
AGAATAGTAATTAATCCTATAAATCTACGCAGTTGCTCAAGAATTCACTATTCTTCTTAATCAACGATTTCTTATATAGAGAGAACGGCCCTCAGAAATT
GCAAATACTAATTTGTTAAGAATTAATCGAATTGAAGTCATAGTGTCATCGTTGGCAGGAATCGATATATTCGCAAGATCTGGGTCACAATTTGTATCGA
CTAAAGAAATAGTAGGAATCCCCAAAATGGCACATTCCTGAAGAGCTATATACTCTTTTTGCTGATCAAGGACGATCACAATGTCAGGCAACCTCGTCAT
ATATTTGAT