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Detailed information on CNT3017987


BLAST search results

BLAST vs Swiss-Prot:
sp|P16025|RPOC2_MAIZE, E-value = 0.0

BLAST vs NONCODE:
NONATHT002194, E-value = 4e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30197323Zea maysPisum sativum34.883.6582.76609forward
CNT30711743Zea maysGlycine max6.1137.6886.92107reverse complement
CNT30596895Zea maysOryza meridionalis42.1765.1496.88738forward
CNT30103579Zea maysOryza rufipogon28.9759.2386.39507forward

Expression of CNT3017987

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MHKFLESGTNRYNPPQNYVFFQTFQPINTTS*

>peptide 2 (70 aa)
MVSSAPIKNPQGTPRILGIRSFQSSILLSRFGDSESIERASKICSTFGRPCVISLDLDFSYINVTNLSPL*

>peptide 3 (58 aa)
MFHRNCLLRQNQKKLILYGETKYLSFPTRIDFFFEFLNKGSCLVGNDAQIFGIRYQQV*

Sequence

>CNT3017987
AAATAGCTTGAAATAAATAATAATTGTTCCAATGGAACCTTCTTGACCATTGATACACGGTATAAACATAGCCTTAATGAATTAACTGACTTCTTTTACT
TATTAAAATACAATTTAAATTTAAGTACAAAATCGAAAATCAGACCTGTTAGCATTCTAAGGTCAAAAGTATAGTTTAAATTAAAGTAAAAAAAATTGCT
TTATGTATACTTAAATCGTATAAATAGGGGTAAACGGGGTCTCTGATGTTTCATAGAAATTGTTTGTTACGTCAGAATCAGAAGAAACTAATTCTGTATG
GAGAAACAAAATATCTCTCATTTCCGACGCGAATAGATTTTTTTTTTGAATTTCTAAATAAAGGTTCTTGTCTTGTGGGGAACGATGCACAAATTTTTGG
AATCCGGTACCAACAGGTATAATCCCCCCCAGAACTACGTTTTCTTTCAGACCTTTCAACCAATCAATACGACCTCGTAGGGCAGCTTTTGCTAAAACTC
GAGCAGTTTCTTGAAAACTTGCTTCAGATATGAAACTTTGGGTATTCAGGGAAGCCCTTGTTATTCCCAATAAGATTGCCCGATAATAGATCGATTCATC
TAAAGCCCGCCCTGCTCGTTCCGCTCGCAATAGTCCTATTAATTCCCCAGGTAAAAAAACATTAGACATTCCATCTTCGGAAACCCTTACTTTTGATGTT
ACTTGGCGTATAATAATCTCTATATGTCTATTATGGATCTGTACCCCTTGGGATCGATAAACCTTTTGGATCTTATTAACCAAAGAGATACGACTTTGGG
CTATGGTTAGCTCAGCTCCAATCAAGAATCCCCAGGGAACCCCAAGAATTCTTGGTATACGTTCATTCCAATCCTCAATTCTCCTTTCGAGATTCGGCGA
TAGTGAATCAATTGAACGCGCTTCGAAGATTTGTTCTACTTTTGGAAGACCTTGCGTTATATCACTGGATCTCGATTTTTCATATATAAACGTAACTAAC
CTATCTCCTTTGTAAAGGATTTTTCCATAATGACCATGAACAGTTGCTCCTATAGTGGCCAAATAAGGCTTAGCTGCTCTTAGAACAAAGGAGTCCATAT
TAACAATGAAAATTTGACCAGATTTTTTTATGTGTAATTTAAATAGACATAAATTTTCACAAATAAATTGTCCAAGGTGAATTATTGCCAATGTCTCTTC
CCATGAGTCATGATGGAGAAAGTGCCAATTCAAATGGAATGGCTCCAACATGATGTTACTGTCAAAATTCGAAATCCTTTTATTTTCGTCTATTAAAGAG
TATTTAAGTCCTTGAAGTACTTGTAAGGTTTGTTTCAAATTGTCAAGGAACAAGTATTTTTTTAACAAGATCTGATTATGCGTTAATAAATAGTAAGATG
AAGAAAAATTCGATATACTAGGTACAATAACGCCTAAGAGCCCAAAAATATCTCGAATAGGAATTCTAGGATTCGATTCTTTTACCGCATTGGGATATTT
AGAATTCTTGAATAAACCAATTCGAGAACAGTTGGATGCCAACAAAATCATCAAAGATGGATATTCTTTATTTCGATTCAACAAGGTGCCAATAACTTCT
TGATGTTGGCTAAGTGATTGAATCTTCGCCTTGGAATAAAAGGAATTGGTATTGTTGCGATCTAACCTATTATTGGGAATCAATCCTACACTTGTCCTAT
CATACCTTCTTCGTGTATACAAAATAGTAGACTTGACTAACTCAATTCTT