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Detailed information on CNT30179714


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 2e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555728Secale cerealeOryza glaberrima36.9154.1985.45323forward
CNT30371468Secale cerealeOryza glumipatula37.7128.6785.15330forward
CNT30557030Secale cerealePanicum hallii22.2949.2487.18195forward

Expression of CNT30179714

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MCMCVAGARIYICMLHNLCSYIHRTYRTKNMLWSESRVVHKSEVHKRPSYIGHCFNL*

>peptide 2 (31 aa)
MHLILPPLLTLPRPALLERRLTGRPPVDLRP*

>peptide 3 (30 aa)
PTSCETYPVQFQIKKLFLQSTARQLSAYCI*

>peptide 4 (30 aa)
MHAPQPMFVHTQNIQNEKYALVGKQSRAQK*

Sequence

>CNT30179714
CACCAACTAGTTGTGAGACATATCCAGTGCAGTTCCAAATAAAGAAGCTTTTCCTTCAATCAACAGCAAGACAATTGTCTGCTTATTGTATATAATAAAT
ATGTATGTGTATGTGTGTAGCCGGTGCTAGAATTTACATATGCATGCTCCACAACCTATGTTCGTACATACACAGAACATACAGAACGAAAAATATGCTC
TGGTCGGAAAGCAGAGTCGTGCACAAAAGTGAAGTTCACAAAAGACCTTCATACATAGGCCATTGTTTCAACTTGTAGTTTAGGCCTTGCCCGACTCCTC
GCAACCCGGTGGCCTGAAGGCAATAAAGCTGACGCACTGCACCTGGCGCAGGTTGTCGAAGCCGATGACACGGACATAGGCGTCAGGGTACTCCTTCTTG
ACCTCCTCCACCTCATTGAGCACCTGTGTGGCGTCGGTGCATCCGAACATAGGCAGCTTCCACATTGTCCAGTATCGGCCGTCATAGTACCCGGGGGAGC
TGTTGTGCTCACGGAAGACGAAGCCAACCTTGCTGAACTCGAGGGCTTCCGTGGAGAGGGGTGGCAAGTAAGACAGGGTCTCGAACTTCTTGATGCCCTC
AATTGGCCACACCTGAATGAATGGAAATTATGGAATGCACACAACTGCTTAACTCTTGGTACGTACTATCAGTTTTGTGCCTCGACATACCTGCATGCAC
CTGATCCTTCCGCCATTGCTGACGCTACCGAGGCCGGCGCTGCTGGAGCGGCGGCTGACGGGCAGGCCCCCGGTGGACTTGAGACCTTGAAAGGGTGCGA
CAGAGGTGGCCGAGGAAGCCATCACAGTGGGGGCCATGGCGTTGGAGGAGAGAAGGTAGCAGGCTACGCTTGAGG