Detailed information on CNT3017956


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 6e-14

BLAST vs NONCODE:
NONSLYT003133, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524649Zea maysSetaria italica49.2552.797.241737forward
CNT30185187Zea maysSecale cereale53.3953.2497.291883forward
CNT30292784Zea maysTriticum aestivum53.3962.8196.971883forward
CNT30223648Zea maysHordeum vulgare53.3979.2893.891883forward
CNT30387090Zea maysTriticum turgidum53.3966.9297.341883forward
CNT30439575Zea maysAegilops tauschii40.15100.4397.531416reverse complement
CNT30242786Zea maysAvena sativa24.72100.6997.13872forward
CNT30670388Zea maysTriticum dicoccoides52.8566.48971864forward
CNT30140120Zea maysLolium perenne53.356.6198.031880forward
CNT30721631Zea maysTriticum spelta53.3354.1697.291881forward
CNT30108930Zea maysOryza longistaminata44.9467.7498.611585forward
CNT30499372Zea maysDigitaria exilis53.4255.4397.611884forward
CNT30603680Zea maysOryza punctata54.0148.2697.81905forward

Expression of CNT3017956

Peptides detected in this lncRNA

>peptide 1 (56 aa)
KIMHWMDARALRRKDAFRGERPWGERASVIHGSPIGKPYPSSVASLRSLDFSNLAN*

>peptide 2 (44 aa)
ENHALDGCPGIEKEGRFQRRKAMGRESVCDPWISDRETVSKLRG*

>peptide 3 (45 aa)
MSNEKSCEKHDRLPVEGFLRSVNLRRVNRSLRNSRKGCRPMGTRK*

>peptide 4 (45 aa)
MMEKPASSKHRLCCRSAPYGIVQSQHWGASIGNTGRGGARSELVF*

>peptide 5 (33 aa)
MMSMARGRALNGLGWPPFRFTNPRETPNTGRHP*

>peptide 6 (32 aa)
MKVVRELGLERRETVWFLSTVGVKGRTARSQP*

>peptide 7 (50 aa)
MTTRRWAWKQPSFEESVIAHWSSSMAPKMSQGSSDSPKRRDLESCFFKCQ*

Sequence

>CNT3017956
CGAAAATCATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGAGAGAGCGTCTGTGATCCATGGATC
TCCGATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTGAGTAGCTAAAGGAAGGAAA
ATCAACCGAGACCCCGTTAGTAGCAGCGAGCGAGAGCGGAACAAGGGTTTTCATCAAAAGAAATCCGAAGCGGTTTCATTCGATTTGTTGTGGATTGGAT
GATGGAAAAACCAGCAAGCAGCAAGCATAGGCTGTGTTGCCGTAGCGCGCCCTACGGAATTGTACAAAGTCAGCATTGGGGCGCAAGCATAGGCAACACA
GGACGGGGTGGGGCGCGCAGTGAACTGGTTTTCTAAAAAGATTGGAAGATCCGGCCAAAGAAGGTGATAGCCCTGTTCATTCGTTCCCATGGTTCGATCC
TTCCCAGTAAAACGCGGCGTGTTCGAATGATGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTAC
AAGTACCGTGAGGGAAAGGTGAAAAGAACCCCAATCGGGGAGTGCAATAGAGAACCTGAGATCCGATGCGAACAATCAGTCGAAGGAGCGGAGCGCGGGC
GCACTCACTCTAACGGCGTACCTTTCGCATGATGGGTCAGCGAGGAAATGGGAACAGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAATG
GAAGATTTACGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTAT
GTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGAT
GTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCTTTACCAACCCCAGGGAAACTCCGAATACAGGCCGTCATCCTTAGTAC
AGACAGACTGATTGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCACTTAGTGGAAAAGGAAGTGAT
CGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAGCTCCATGGCACCGAAAATGTCTCAGG
GCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGCTGCTTTTTCAAGTGTCAGTAGCGGGACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACAAGA
CCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAGAAATCCTGTGAAAAACACGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATC
TACGCAGAGTGAATCGGTCCCTAAGGAACTCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACTGAACCATGCCTGG
ATCGTCGGAGCGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCGCTCTCCTTTCCTTAATATTCACCGTCGAGTCATCAAAGCCGTCAACT
AATTCGGAGGGGCTCGGCTGGCCCGGTCGCCCTACGCTACTGGCGCTTCCAAAGGCGAAGCTCTCGTCTTTGGCGACCAGCAAAGCAAACGGAGGGAGGG
CTAAAACCTTTCGTTTTGAAGCAAGGGATGAGCGCGAAAGCCGTTGCGCTTCCGTACACGCGCATACTCTTGCTCCGTCGCGCGTTAGGTTAGGTTAGTA
CTTAGTACTTAACTTAGTACAATAACGCGCAGCCGTTTTGGGCGGACACGGTTCTCTAAAGGCGAAGACTCTGAAGTGGGCGAACACTCGGCCCAGCGGG
CGAACATGCCGGCTCCGGCTCCGCGCACCTGCTCACACCTTTCGAAGCACTTTCACGTGTGAACCGAAGTCGTCTTGTCCTTCCTTTCTCATTTCAGTCC
TCGCCTTTTTCATCTTCCGTAGGGGCCTTTAGTCTTTTGATTAGAGTAGAGGTCGCGAGAGAGCAGAGCGTACCGCCCTGCCATAGTCGCGAGGATCTTA
ATAGTCGGTCGCGACTGTTGTCATAGTCAACGACGGTTTAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCC
CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGTGTCGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGG
TGCTCTCCTATCTTTTGATTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAGA
GTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTGATAAGCTTTGAATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAG
GTAGCGAAATTCCTTGTCGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAAATTGAATTCTCCGTG
AAGATGCGGAGTACCAATGGCTAGACGGTAAGACCCCGTGCACCTTGACTATAGCTTCGCAGTGACAACCTTGATCGAATGTGTAGGATAGGTGGGAGGT
GGTGACACACAACGACCAATCCTGAAAGACCACTCTTTCGTCTAAGGATGCCTAACCGCCGCACCGATCATTCGGGGGGGGGGGGGGGCGGGACACTGCG
AGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTGAGCGTAATGGTATAA
GCCTGCCTGACTGTGAGACCGACTAGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAG
GTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTATCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGG
TCCCAAGGGTTCGGTTGTTCGCCGATGAAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTTGGTTCCTATCTACCGTTGGTGTTAAAGGGA
GAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGGGTTGGGTCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGT
ATGGAAGAACTGCTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGTACGAGGTTTTTGAACAGAACTTCGATAGGCGAGAGGTGTAAGCACCGCGA
GGTGTGAAGCGATCTCGTACTAAACGA