« Back to Zea mays search


Detailed information on CNT3017954


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 6e-14

BLAST vs NONCODE:
NONSLYT003133, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696398Zea maysOryza sativa12.6910098.75481forward
CNT30670969Zea maysSetaria viridis2789.6699.021023reverse complement
CNT30641383Zea maysNymphaea colorata37.5345.5293.951422forward
CNT30550219Zea maysIpomoea triloba37.432.6397.461417forward
CNT30702366Zea maysQuercus lobata26.44100.697.71002reverse complement
CNT30378673Zea maysArabidopsis thaliana1957.7496.25720reverse complement
CNT30619000Zea maysSesamum indicum26.2632.5793.97995forward
CNT30283003Zea maysChenopodium quinoa23.8894.7696.91905reverse complement
CNT30730481Zea maysCorchorus capsularis31.4196.7593.031190reverse complement
CNT30632346Zea maysVigna unguiculata36.2149.0597.161372forward
CNT30490123Zea maysOlea europaea14.0130.596.42531forward
CNT30505560Zea maysNicotiana attenuata36.8763.1896.781397reverse complement
CNT30157603Zea maysPistacia vera19.7978.6290.13750forward
CNT30299053Zea maysTriticum aestivum41.7544.1597.791582forward
CNT30569655Zea maysActinidia chinensis37.2739.6596.61412forward
CNT30543268Zea maysBrassica napus31.4951.9895.051193forward
CNT30147396Zea maysMedicago truncatula36.6346.6696.761388forward
CNT30140161Zea maysLolium perenne41.6546.3699.051578forward
CNT30605068Zea maysGossypium raimondii30.7276.1896.311164reverse complement
CNT30216563Zea maysKalanchoe fedtschenkoi36.5335.5997.181384forward
CNT30655407Zea maysRosa chinensis37.0842.0396.871405forward
CNT30207637Zea maysHelianthus annuus28.2954.8193.841072forward
CNT30628241Zea maysDaucus carota34.7148.798.021315reverse complement
CNT30689137Zea maysTriticum urartu27.4586.4598.081040forward
CNT30346087Zea maysEragrostis tef22.5782.6998.83855forward
CNT30360996Zea maysLactuca sativa28.2773.4194.581071forward
CNT30429739Zea maysPapaver somniferum34.5540.6993.741309forward
CNT30571858Zea maysVitis vinifera38.1641.7297.231446reverse complement
CNT3056076Zea maysAmborella trichopoda31.1751.392.131181forward
CNT3038324Zea maysCucumis melo34.8670.0496.91321reverse complement
CNT30557400Zea maysPanicum hallii17.2947.7497.71655forward

Expression of CNT3017954

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MFDAIENHALDGCPGIEKEGRFQRRKAMGRESVCDPWISDRETVSKLRG*

>peptide 2 (50 aa)
MTTRRWAWKQPSFEESVIAHWSSSMAPKMSQGSSDSPKRRDLESCFFKCQ*

>peptide 3 (54 aa)
MHWMDARALRRKDAFRGERPWGERASVIHGSPIGKPYPSSVASLRSLDFSNLAN*

>peptide 4 (45 aa)
MSNEKSCEKHDRLPVEGFLRSVNLRRVNRSLRNSRKGCRPMGTRK*

>peptide 5 (33 aa)
MMSMARGRALNGLGWPPFRFTNPRETPNTGRHP*

>peptide 6 (32 aa)
MKVVRELGLERRETVWFLSTVGVKGRTARSQP*

Sequence

>CNT3017954
CTTGAATTGAAGGTTGTCACATTTGGTACTGGTCAATAACTTACGGCGAGACGAGCAGCCCTATACCACGTGTAGCCACACTCGTCTGTCCTTTTCTACT
TAGTTTTTGTTTTAGTTGGACGAAAAGAAAATCGTATAAAAATCAAGCAAGAGGATGCGCCTAGCGCTAGTTGCTCAATCCGTTGCTTGCTTCTCTTCTG
TCTTGGAAAAGTAAAGTGAGGATTTCCTATCTGATCCAAGGGAAGGAAGAGAGGTGGAAAGTGTTGCTGTGTCAAATTGAGATTGTGTGGGTGTTCAGTC
TACCGCTCATGTTCGACGCTATCGAAAATCATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGAGA
GAGCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACAT
CTGAGTAGCTAAAGGAAGGAAAATCAACCGAGACCCCGTTAGTAGCAGCGAGCGAGAGCGGAACAAGGGTTTTCATCAAAAGAAATCCGAAGCGGTTTCA
TTCGATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCAGCAAGCATAGGCAACACAGGACGGGGTGGGGCGCGCAGTGAACTGGTTTTCTAAAAAG
ATTGGAAGATCCGGCCAAAGAAGGTGATAGCCCTGTTCATTCGTTCCCATGGTTCGATCCTTCCCAGTAAAACGCGGCGTGTTCGAATGATGATCGCTTT
TACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCCAATCGGGG
AGTGCAATAGAGAACCTGAGATCCGATGCGAACAATCAGTCGAAGGAGCGGAGCGCGGGCGCACTCACTCTAACGGCGTACCTTTCGCATGATGGGTCAG
CGAGGAAATGGGAACAGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAATGGAAGATTTACGTTCTTCCTATTTGACCCGAAACCGATCGA
TCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAG
GCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGG
CCCCCATTTCGCTTTACCAACCCCAGGGAAACTCCGAATACAGGCCGTCATCCTTAGTACAGACAGACTGATTGGGTGCTAAGATCCAAAGTCGAGAGGG
AAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCACTTAGTGGAAAAGGAAGTGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCAT
CCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAGCTCCATGGCACCGAAAATGTCTCAGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGCTG
CTTTTTCAAGTGTCAGTAGCGGGACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACG
AGAAATCCTGTGAAAAACACGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAACTCCCGAAAGGG
CTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACTGAACCATGCCTGGATCGTCGGAGCGAATTGGATGATCGGGCCGAGGGCTGCCC
CCTCTTCCCCTCGCTCTCCTTTCCTTAATATTCACCGTCGAGTCATCAAAGCCGTCAACTAATTCGGAGGGGCTCGGCTGGCCCGGTCGCCCTACGCTAC
TGGCGCTTCCAAAGGCGAAGCTCTCGTCTTTGGCGACCAGCAAAGCAAACGGAGGGAGGGCTAAAACCTTTCGTTTTGAAGCAAGGGATGAGCGCGAAAG
CCGTTGCGCTTCCGTACACGCGCATACTCTTGCTCCGTCGCGCGTTAGGTTAGGTTAGTACTTAGTACTTAACTTAGTACAATAACGCGCAGCCGTTTTG
GGCGGACACGGTTCTCTAAAGGCGAAGACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGCTCCGGCTCCGCGCACCTGCTCACACCT
TTCGAAGCACTTTCACGTGTGAACCGAAGTCGTCTTGTCCTTCCTTTCTCATTTCAGTCCTCGCCTTTTTCATCTTCCGTAGGGGCCTTTAGTCTTTTGA
TTAGAGTAGAGGTCGCGAGAGAGCAGAGCGTACCGCCCTGCCATAGTCGCGAGGATCTTAATAGTCGGTCGCGACTGTTGTCATAGTCAACGACGGTTTA
AACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGT
GTCGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAAAGCGGCACATACCAG
GGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAG
TGTGATAAGCTTTGAATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGCATAAGTAGCGACCTGCACGA
ATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAAATTGAATTCTCCGTGAAGATGCGGAGTACCAATGGCTAGACGGTAAGACCCCGTG
CACCTTGACTATAGCTTCGCAGTGACAACCTTGATCGAATGTGTAGGATAGGTGGGAGGTGGTGACACACAACGACCAATCCTGAAAGACCACTCTTTCG
TCTAAGGATGCCTAACCGCCGCACCGATCATTCGGGGGGGGGGGGGGGCGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGT
AACGGAGGTGTGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTGAGCGTAATGGTATAAGCCTGCCTGACTGTGAGACCGACTAGTCGAACAGAGACGA
AAGTCGGCCATAGTGATCCGGGAGTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCT
TATCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATGAAAGTGGTACGTG
AGTTGGGTTTAGAACGTCGTGAGACAGTTTGGTTCCTATCTACCGTTGGTGTTAAAGGGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGGGTT
GGGTCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACTGCTGCGCCGCGGGAAATCCTTCTCTATAC
AAGTTCTCGTACGAGGTTTTTGAACAGAACTTCGATAGGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAT