Detailed information on CNT3017925


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673952Zea maysSetaria viridis38.3966.6798.17438reverse complement
CNT30525798Zea maysPhaseolus vulgaris22.1732.7795.26253reverse complement
CNT30177674Zea maysSecale cereale51.4528.9299.15587forward
CNT30221081Zea maysHordeum vulgare44.9625.3399.22513forward
CNT30394116Zea maysTriticum turgidum36.63100.9798.8418reverse complement
CNT30555411Zea maysOryza glaberrima22.8764.76100261reverse complement
CNT30658798Zea maysTriticum dicoccoides19.1171.2499.54218reverse complement
CNT3067405Zea maysLeersia perrieri36.2810095.65414reverse complement
CNT30647597Zea maysRosa chinensis27.3461.1894.23312reverse complement
CNT30203328Zea maysHelianthus annuus50.9270.696.56581reverse complement
CNT30371139Zea maysOryza glumipatula27.2662.8398.71311reverse complement
CNT30409295Zea maysPapaver somniferum49.0899.1295.89560reverse complement
CNT30102660Zea maysOryza rufipogon29.2789.396.71334reverse complement
CNT30604605Zea maysOryza punctata18.9393.5195.37216reverse complement
CNT30603109Zea maysGaldieria sulphuraria5.3523.3791.861reverse complement

Expression of CNT3017925

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MLIPQIPSLFLLREKKLTTRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQCG*

>peptide 2 (36 aa)
MISSWSERMISHTGTETRPRLLREAAVGNFPQWAKA*

>peptide 3 (31 aa)
MGESLTEQCRVEVEGLRVVNFFSRRRNNDGI*

Sequence

>CNT3017925
GCAACTATGAATCTCATGGAGAGTTCGATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACATGCAAGTCGAACGGGAAGTGGTGTTTCCAGTGG
CGAACGGGTGAGTAACGCGTAAGAACCTGCCCTTGGGAGGGGAACAACAACTGGAAACGGTTGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAGAAATC
CGCCCAAGGAGGGGCTCGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTG
GGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAGGC
CTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGG
ATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTCAATTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGAC
TTGAAAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTA
TTCCTCAGATACCGTCATTGTTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTAGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCAT
TGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCT
TGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGGGCGGATTTCTCCTTTTGCTCCTCAGCCTACGGGGTATTAGCAACCGTT
TCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTTCGCCACTGGAAACACCACTTCCCGTTCGACTTGCATGTGTTAAGCAT
GCCGCCAGCGTTCATCCTGAGCCAGGATCGAACTCTCCATG