Detailed information on CNT3017917


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENW6|ATPA_SACOF, E-value = 3e-140

BLAST vs NONCODE:
NONZMAT000296, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30268703Zea maysChenopodium quinoa6.5724.490.84273forward
CNT30506790Zea maysNicotiana attenuata4.1228.1290.06171reverse complement
CNT30710758Zea maysGlycine max4.3860.8787.91182forward
CNT30161394Zea maysPistacia vera2.5348.8487.62105forward
CNT30439866Zea maysAegilops tauschii1.4925.7395.1662forward
CNT3066861Zea maysLeersia perrieri2.3134.4188.5496reverse complement
CNT30689283Zea maysTriticum urartu27.945.6892.581159forward
CNT30604150Zea maysOryza punctata4.3333.2190.56180reverse complement
CNT30551824Zea maysOryza brachyantha5.8399.1893.39242forward

Expression of CNT3017917

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MKVDYLAIKFTIFMISSRTKHESFDSFGSPAPFFLFCYVLWLFPYLFFM*

>peptide 2 (38 aa)
MMSSSCQKKKKWLRIQSTKKLLLPTSKLYRVEVTNKYK*

>peptide 3 (52 aa)
MNLSIHLALPLLFFFFVMYYGYFHIFFLCNEPILYPLFSVCISIYPNLYKTR*

>peptide 4 (40 aa)
MAPRMPILARIVRKCNSVFKQLFRVPRAPCTACWKTRCRT*

>peptide 5 (37 aa)
MILIILFLFLFNQSLFYSILFLLFDIFEFPFFPLHLT*

>peptide 6 (35 aa)
MAISISFFYVMSLSSILSFLFVFLYTQTYIRLDEY*

Sequence

>CNT3017917
GTGAATGTCTTACTAGAAGATATAATTTCTTGGAATTGAGGTTTAGTATCTTTTAGGTGTTTACGTAACTCATCCAGAAATTTCTTTACCTGTTCAATTT
CTAACGAATCAAGATATCCTCTCGTTCCGGTATAAATAGTAGCTACCTGCTCTTCCACTGGGAGAGGGTTTGATTGGATTGTTTAAGCAATTCCCGTAAT
CGTCGACCCCTTGCCAATTGATTCTGACTTGTTTTATCCAGAGCGGAGGCGAATTGTGCAAAGGCTTGTAATTCTGCGAATTGAGCTAGTTCCAATTTTG
ATTTGCCAGCTACTTGTTTCATGGCTTTAATTTGAGCTGCGGATCCTACTCTGGAAACTGAAATACCCACATTAATAGCAGGTCGAATTCCGGCATTGAA
TAGATCCGCGGATAAGAATATTTGTCCATCTGTAATTGAAATTACATTAGTAGGAATATAGGCGGAAACGTCTCCAGATTGAGTCTCCACTATTGGTAAA
GCGGTCATACTCCCTTCGCCTAAAAGAGAATTTAATTTAGCGGCTCTTTCTAAAAGGCGTGAATGCAATAAAAAACATCCCCTGGATAAGCTTCGCGGCC
GGGAGTCTTCTTAATAGAAGGGACATTTGGCGATAAGCTTGTGCCTGTTTGGAGAGATCATCATAAATTATTAAGGTATGCCGTTCGCGGTACATAAAAT
ACTCAGCCAGGGCTGCTCCCGTATAAGGAGCGAGATATTGTAATGTAGCGGGTGAATCCGCCATTTCAGCTACTACAATAGTGTATTTCCATGGCCCCCT
CTTCGTGGAAAGTAGTTACTACTTGAGCCACGGAGGATGCTCTTTGACCGATAGCTACATAAACACATATTACATCTTGACCTTTTTGATTGAGAATTGT
ATCTGTGGCTACTGCTGTTTTGCCAGTCTGTCTGTCCCCAATAATTAACTCTCGCTGACCGCGCCCTATGGGGATCATCGAATCGATAGCAATAAGCCCT
GTTTGAAGGGGTTCATATACGGAACGCCTAGAAATTATACCCGGAGCAGGAGATTCAATTAAGCGAGATTCTGAAGCGACAATTTCGCCTCTCCATCAAT
AGGTTTAGCGAGAGCATTTATAACACGACCCAAGTAAGCCTCGCTCACGGGTATCTGAGCAATTCTTCCTGTTGCTTTTACAAAACTTCCCTCTTGTATC
ATCAACCCATCGCCCATTAATACAATCCCAACATTTTTAGATTCCAAATTCAGAGCAATACCTCTCGTCCCTTCTGCAAATTCGACTAATTCACCTGACA
TTATTTCACCAAGACCTATAATACGAGCAATCCCATCCCCCACTTGCACTACGCGACCGATATTCTCAATCCCTACTTTCCTATTATTTGTTCAATACGT
TCGCGGAGAATTTTATTAATTTCGTCGACTCGAAGGGTTGCCATTAGTGTTTCTTTAATTTTTTTTTTTTGGAAGCAAGGGAAAAATAATGCCTAAATTC
TAAACAAAGTAGAAGTTCAAAACCTAATAAATTGAATTATCTCTTCCATTCTATGGCCCCGAGAATGCCAATATTAGCACGAATCGTACGGAAATGTAAC
TCGGTATTCAAACAACTATTCAGAGTTCCTAGAGCTCCTTGTACAGCTTGTTGGAAAACCCGTTGTCGGACCTGATTCATCGCCCTTTGTTTTCAAAATA
AAGGGTTTCGTTTTTTAGACTTTTCTAATTGTTCCAAACTAATAGAAGTAGCATTAATCAAATTTTCTTTTTCTCGTTCTATTTCAGAGTATCCATTCAT
TCGATACTCATCTGCTTCCAGTTCGACTTTCTGTAATCGAATACGAGCTTTTTCGAGTTGTTCAAGGGTCCCTTTACGCAATTCTTCCGAATTTCGAATA
GTACTTAAAATCCTCTGTTTTCGATTATCTAATAAATCTTTTAATGAAAGTAGATTATCTTGCTATTAAGTTTACAATTTTTATGATCTCTTCCCGAACC
AAACATGAATCTTTCGATTCATTTGGCTCTCCCGCTCCTTTTTTTCTTTTTTGTTATGTATTATGGCTATTTCCATATCTTTTTTTTATGTAATGAGCCT
ATCCTCTATCCTCTCTTTTCTGTTTGTATTTCTATATACCCAAACTTATATAAGACTAGATGAATATTAAGAGGACTCTTCCAACTAGATAAAAATCTAT
CATGGTCAGCAAAGTTGTTTCTTTATTTGTGTTTGCTCTGTTAGTTAATAATTTCAATTTCATTAAGAAAAACTAACTAAATAAATGGAAAATAAAAATT
GATAGAATTCCTTTTATTTTTCTTCAAATCCAAAAAATTTCTCTTTTTTTATACATAGGTCGTCGATTTGGCATTGGAAAAAGGGCTGCGTGCCCTTCTA
GTAAATAGTTCAAACTATTTTATCGATATGAGTGTTCTATATCAGATAAATTCTACACTAGCTATTCCCGTTTAAAGCATTTCGAGACTAATACTAATGT
AGTTGTAGAAAGAGTACCCCTTTTTGCCCGGACTTCAAGCAGTTTAGCTTTAACCGTGTTAATGGTCTCACATTATTGGTCTATAGAGAATCAAAGTAAA
TTTACCAATGAATCGCGAAATGCTATGGTTCTTCCATATGATTTCTGAAGTTATTCAGAAGTAATTCGTCGAGATCGTGCACCTTTTCTTATTTATCAAA
AAAAATACTAAAAATATTCTAAAGTGCAGCCGGATAGATCCAATCTATTCTTGAAATAGACAACTCGCACACACTCCCTTTCCAAAAAAAAATCAATACA
CCAACCACTACAGTTAGATTTATTAGATTGTTGCTAAAATATCGGTATTAAGCCCGAAACTCCCAGCGAATGGCCAGTGAGCTAAAAAAACAAAAGAATG
GGTTACATTTTTCATATGCTCTCCTCTTATAGATAGGACGAACAAAGAAGAAAGTTTTTCGATTACTTACTTCGCTCGTCCTTTTTGATCGGTTTTTTTA
ATGCAAATAGATTCAATCTAATAATTTCTTTTAGATTAAGTCTTAGGTCTCGTTTGACCTGTGAAAGATCTCCTTTGTTGAAATGTTCCCAAAATTCCTA
AAATAAAAGGAAAAATACTTTCCACTGTCCTAAACTAAGGACGGGAAGGAAGAGGGCGAGCATATCCTCTAAATTGATCATGCTCAAATCAGCCCTTCTT
GGGGTTCCTAGGGTATTGTCTGTCCCGATAAATACAAAATTTCCGGAATAATATAAAAAAGAAATAATATAATAAATAGGAGTAAAGTAAAGTATTGATA
TACTTAGAATTACATAAGCAAATGCCATGTACTAAAAAAAGAAAAAAGTATCTAATCTAAAGGACTCATTTTCTTTTTTAGGATTAAACAAAAGGGTTCG
CAAATAAAAGCGCTAGTGCCACAACCAGTCCATAAATTGTTAAAGCTTCCATAAAAGCTAGACTAAGCAATAAAGTACCTCTTATTTTACCTTCTGCTTC
TGGCTGTCTCGCAATACCTTCTACAGCTTGTCCTGCAGCAGTACCTTGACCAACTCCGGGCCCAATAGAAGCAAGCCCTACGGCCAATCCAGCAGCAATA
ACGGAAGCAGCAGCAATTAGTGGATTCATGATGAGTTCCTCGTGTCAAAAAAAAAAGAAATGGTTAAGGATACAATCAACCAAGAAATTATTACTTCCAA
CTTCTAAGCTCTATCGGGTAGAAGTAACTAATAAGTACAAATAAATGATAATCGAAATCGTTCGAATTACTTCGAGATCTCGTTTTTTAGTTTCTAATCA
TTAGAGGTTTGTGTAAATCCATATGATTCTCATTATTCTATTTCTCTTTCTTTTCAACCAATCACTCTTTTATTCCATCCTTTTTTTACTCTTCGATATC
TTTGAGTTCCCATTTTTTCCCCTTCATCTAACATAATAAAAGACGAAATACAGGAAGAACCCCTATTGAAATCGAACTAATCCAAATCCAATAGGAATCA
AATCAAGATATACAATTGATAACAATATGCTGCATAGAACTAGATATGGAATCCAGTTCCATATAGAAGGGAATTCTATATATCGGATTAGATAATGAAT
CTAACTTAGGAATAAAAAAAATCCCATATACATTTGTTTCTTCTATTTTGTTTG