CANTATAdb - search

Detailed information on CNT3017916

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENW2|YCF3_SACOF, E-value = 3e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30618958	Zea mays	Sesamum indicum	21.77	8.06	88.42	449	forward
CNT3020650	Zea mays	Citrullus lanatus	21.29	25.23	90.89	439	forward
CNT30730408	Zea mays	Corchorus capsularis	20.85	90.91	90.7	430	forward
CNT30201085	Zea mays	Pisum sativum	21.39	21.83	90.25	441	forward
CNT3094383	Zea mays	Solanum tuberosum	5.19	49.77	89.72	107	reverse complement
CNT30194121	Zea mays	Secale cereale	38.85	89.5	95.63	801	forward
CNT30222203	Zea mays	Hordeum vulgare	9.26	34.23	91.1	191	reverse complement
CNT30171250	Zea mays	Trifolium pratense	4.85	27.4	93	100	forward
CNT30245953	Zea mays	Avena sativa	12.85	99.62	91.32	265	reverse complement
CNT30598583	Zea mays	Fraxinus excelsior	12.17	25.2	86.06	251	forward
CNT30445979	Zea mays	Saccharum spontaneum	19.06	100	99.75	393	forward
CNT30232528	Zea mays	Ananas comosus	48.25	50.28	89.15	995	forward
CNT30217417	Zea mays	Kalanchoe fedtschenkoi	18.48	81.41	87.93	381	forward
CNT30655373	Zea mays	Rosa chinensis	22.21	10.94	91.05	458	forward
CNT30627898	Zea mays	Daucus carota	21.14	14.17	91.97	436	forward
CNT30351181	Zea mays	Eragrostis tef	25.51	104.16	89.35	526	forward
CNT30596972	Zea mays	Oryza meridionalis	61.01	100.56	89.59	1258	forward
CNT30369475	Zea mays	Oryza glumipatula	16.39	34.63	89.05	338	forward
CNT3022800	Zea mays	Populus trichocarpa	16.49	100	90.59	340	forward
CNT30332506	Zea mays	Dioscorea rotundata	23.67	53.57	87.91	488	forward
CNT30103640	Zea mays	Oryza rufipogon	36.91	99.48	92.77	761	forward
CNT30574986	Zea mays	Oryza barthii	16.39	33.01	91.42	338	reverse complement
CNT30116311	Zea mays	Oryza nivara	18.14	99.73	94.39	374	forward
CNT30604206	Zea mays	Oryza punctata	9.65	50	95.48	199	forward
CNT30550879	Zea mays	Oryza brachyantha	10.48	53.87	96.76	216	reverse complement
CNT30114189	Zea mays	Ficus carica	21.39	11.2	88.44	441	forward

Expression of CNT3017916

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MDRRGLVFFQEISSQPSPKRFFLTPMNYINARGKR*

>peptide 2 (31 aa)
MDKRDMDFPLSSNCLLFLLFGQEEKRYEIFD*

>peptide 3 (51 aa)
MLEENDSSKNFFVLNASYLEELATSTTFDGYKGIQSTNLMVVCYPNHSSQP*

>peptide 4 (44 aa)
MKYLTKTGFHSTFLFLNNNFPHQLFRVFKVINCPIPLLYLDCMA*

>peptide 5 (38 aa)
MKRNFSIQSNRAMEFPSRCGCTCTAGIRKLAIHSVYFP*

Sequence

>CNT3017916
ATAATGAAATTCTTGATTTGATTTTCAACCAAACCACCCTTTTTATGAAAATGGAGAGTGGTCTTATTCAAATTCAAAGCGCTTCGTAATCTTTAACCAG
TTCTGTGCTTCAATATAATTTCCTGGAGTAAGCGCTATAGCTTGTTTCCAATACTCAGCAGCTTGATCAAACCAAGCTTCCGCAATTTCCGAATCGCCCT
GTAGAATGGCCTATAGTCGCACGTAATGACAGATCACGGCCATATTATTAAAAGCTTGCGGTAAGAAGGGGTTTCGTTCTAGCGCCCGGAAATAATATTC
CAAAGCCTTTGTATGCTCTCCATTGCTTGTGTGTATAAGGCCTATGTTATATAGTATATAACTTCGATCATAGGGATCAATTTCTAGTCGCGTAGCTTCA
TAATAATTCTGCAAAGCTTCCGCATAATTTCCTTCGGATTGAGCCAACATCCGTTACGGTCGTTCATTCTATTCAAAAAATCTCCGTTCCAAAACCGTAC
ATGAGGTTTTCATCTCATACGGCTTCTCCCTTCTATACATAGTACTAAGCGAAAAATCTATAGAATAAAAATCGAATTAGTCCCATCTCATTATGGACCG
AAGGGGGCTGGTATTTTTCCAAGAAATCTCTAGCCAACCTTCCCCCAAGAGGTTTTTCTTAACACCAATGAATTATATTAATGCTAGAGGAAAACGATAG
CTCCAAGAATTTCTTTGTTCTCAACGCCTCCTATTTAGAGGAATTAGCCACTTCAACGACCTTTGATGGTTATAAGGGTATCCAAAGTACAAACCTGATG
GTTGTTTGTTATCCCAACCATTCTTCCCAACCCTGATACCAATCAGGAAAGGGCTAATTTCTAACAAAGTTTTTCTCTTGTTGATTCCTATTTCGTGGTG
TAGTGCTTTTCTCCCCTATGCTGCCTATTGGTACTAGTAGAGTCGGATTGCCCTGTAATACAGAACCTATCCTGTAGGTGTAACCTTTCGCTCAATACTC
AAATCTACAATTGAAGCATCTGAGGCCACATCAATCGAGGATACACGACAGAAGGAATTGTTAGTTCACCTCACCTTCCCCAAGCGCGGGTTTCCTTTAC
TAATTTTGTTCTCTCTATGCGAACCCTCTCTCTTTCTCGTAAGAATGAGATATAGGTAGGGCTAAAAAAAAAAAGAGTCAAATCGCACCATCTCTATAAT
AAGTAAATGCCCTTTTTTCCCCGGAGGTTGTCGGAATTATTTGCAATAAAATATTGGCTACAATCGAGGAGGTCTTATCAATGAAATTTCCATTTATACG
GGATCTAGGCATAATTCCCAACCCATTCTATATAGAATTCTTTTCATTCTATCACAAAATAACATAAAAACAAAACATTCGATTCTTATAAATCGATCCA
TATGCTCTAAATGGATAAGAGAGATATGGATTTTCCGCTCAGCTCAAATTGTCTCCTTTTCCTTCTGTTTGGACAAGAAGAGAAGAGATATGAAATATTT
GACTAAGACTGGATTTCATTCCACTTTCCTATTTCTCAACAACAACTTCCCTCATCAGCTATTTCGCGTTTTCAAAGTCATTAATTGCCCCATACCCCTT
TTATATTTAGATTGTATGGCGTAATGTACCTTATGCAAATGGAATTCTAGGGTTCCTTTATTTTCTTATGGAATAAGAAGAATTCTTCCATTCTCTTTTT
ATTTTGGTTTTCCCCAAAGAAAAACTTTTCGAGGGAGCAGAATTCCTAGTAAAAAAATACAGGATCCTTCCACTTAGATGAAAAGGAATTTTTCCATCCA
ATCCAATAGAGCCATGGAATTCCCGAGCCGTTGTGGCTGTACCTGTACTGCAGGAATACGAAAACTCGCTATTCACTCAGTTTATTTTCCATAATAAGAT
TATGTAGGAGAGATGGCCGAGCGGTTCAAGGCGTAGCATTGGAACTGCTATGTAGACTTTTGTTTACCGAGGGTTCGAATCCCTCTCTTTCCGTTTCTCT
TAATTCATCAATGTTAGCGATCACAATGTATCAAATTAAATAACAATTTATTCCAACAATAA