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Detailed information on CNT30179138


BLAST search results

BLAST vs Swiss-Prot:
sp|P05621|H2B2_WHEAT, E-value = 8e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675682Secale cerealeSetaria viridis29.1251.8893.19235forward
CNT30379403Secale cerealeManihot esculenta14.3720.6484.48116forward
CNT30196132Secale cerealePisum sativum24.5441.7782.83198forward
CNT30163372Secale cerealePistacia vera14.3720.1482.76116forward
CNT30220727Secale cerealeHordeum vulgare36.1837.4496.92292forward
CNT30668428Secale cerealeTriticum dicoccoides58.6184.6294.71473forward
CNT30455629Secale cerealeSaccharum spontaneum39.0336.7196.19315forward
CNT30136307Secale cerealeLolium perenne35.5648.3295.12287forward
CNT3015998Secale cerealeZea mays25.6553.6392.27207forward
CNT30606042Secale cerealeGossypium raimondii17.4746.2385.82141forward
CNT30205622Secale cerealeHelianthus annuus9.1727.4190.5474forward
CNT30129800Secale cerealeCorymbia citriodora35.8135.989.97289forward
CNT30346527Secale cerealeEragrostis tef21.8183.4196.59176forward
CNT30363575Secale cerealeSorghum bicolor39.0334.1695.87315forward
CNT30596761Secale cerealeOryza meridionalis27.0127.5994.04218forward
CNT30360275Secale cerealeLactuca sativa24.0443.482.99194forward
CNT30369169Secale cerealeOryza glumipatula36.5651.4894.92295forward
CNT30103076Secale cerealeOryza rufipogon23.5431.5194.74190forward
CNT30577496Secale cerealeOryza barthii25.0337.8394.55202forward
CNT30557628Secale cerealePanicum hallii27.5139.8694.59222forward
CNT3065708Secale cerealeSelaginella moellendorffii15.8636.8985.94128forward

Expression of CNT30179138

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MVGFLLYLASLADSPASFSKMSLMKEFMMDMALEEMPMSGCTCFSTLKM*

>peptide 2 (44 aa)
MDAAAAAASSTGGEVWCLAGMGGRGGLVGNRRRGRGEFIGGESGS

>peptide 3 (37 aa)
MPRLLLLLRRGERCGVWLGWEAEEDWWGIGGGGAASL*

>peptide 4 (41 aa)
MKQSVPTQPAQITRPTWSEQMTIAENHRSTRKRGSMLSRRR*

Sequence

>CNT30179138
GAGACCAAACAAAGATAAAACTCACACAAACAGAATTACAGCATGAGAATTATGTCAAGTGAAACGGAAGGAAACACAGTAAGAACTGAACATTGTAGAG
AGCCATGAGACAGATCAAAGAAGACCATTGCTATTTCACGAGATAATGAAACAGTCTGTTCCAACACAACCAGCACAAATCACAAGACCAACATGGTCCG
AACAGATGACAATTGCAGAGAACCATCGATCCACCAGGAAGAGAGGAAGCATGCTATCTAGGAGGAGGTGAACTTGGTGACGGCCTTGGTGCCCTCGGAG
ACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGACGTCTGGATCTCCCTGGAGGTGATGGTGGGCTTCTTGTTGTACCTCGCGAGCTTGG
CGGACTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGCACCTGCTTCAG
CACCTTGAAGATGTAGATCTTGTACGTCTCCACGCTCTTCTTGGCCTTCTTCTTCCCCTTCTTCTCGCCGCCCTCCTTGGAAGCCGGCGGCCGCTTCTCG
GCCTTGGTCTTCTTCGCCGCCGTGGTCTTCTCGGCCTTCTCGGCCACCGGCTTCTTCTCCGCCTTGGGGGCCATGGATGCCGCGGCTGCTGCTGCTTCTT
CGACGGGGGGAGAGGTGTGGTGTTTGGCTGGGATGGGAGGCAGAGGAGGATTGGTGGGGAATCGGCGGCGGGGGCGCGGCGAGTTTATAGGAGGAGAGAG
CGGGTCT