CANTATAdb - search

Detailed information on CNT3017910

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENP7|NU4C_SACOF, E-value = 2e-125

BLAST vs NONCODE:
NONORUT005924, E-value = 7e-114

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30381120	Zea mays	Manihot esculenta	5.47	53.23	83.33	132	forward
CNT30196709	Zea mays	Pisum sativum	55.56	75.92	81.72	1340	forward
CNT30184264	Zea mays	Secale cereale	38.81	54.74	93.27	936	forward
CNT30221821	Zea mays	Hordeum vulgare	45.32	87.72	92.22	1093	forward
CNT30395374	Zea mays	Triticum turgidum	39.84	90.75	92.92	961	forward
CNT30258499	Zea mays	Avena sativa	9.45	75.5	94.3	228	forward
CNT30610707	Zea mays	Gossypium raimondii	12.15	77.31	85.32	293	forward
CNT30231113	Zea mays	Ananas comosus	24.46	78.15	88.64	590	forward
CNT30680248	Zea mays	Triticum urartu	8.13	65.99	90.31	196	forward
CNT30434219	Zea mays	Papaver somniferum	10.74	71.75	89.96	259	forward
CNT30327547	Zea mays	Asparagus officinalis	37.11	28.4	85.7	895	forward
CNT30585663	Zea mays	Echinochloa crusgalli	22.64	89.66	97.62	546	forward
CNT30551956	Zea mays	Oryza brachyantha	21.02	20.06	93.69	507	forward

Expression of CNT3017910

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MLPSLIEFRLKAYMYCNALPHGYLVTTYVKV*

Sequence

>CNT3017910
GATAGATCTAATTAGACTTTTTTACTTTTTTCTGAATTTTTTATTTTTCCACTCTGGAATATAGAGCGGACTGGTTAAAAAAAGAAAATCCTATTTAGTA
TAATAATTGGATAATAGAACCTCTACCCTATCAACGGATAGCGAGGAGAACCAAATCTGGATAAATACCAATTCCTATTACTGGTAAAAAGATACAGATT
AAAAGAAAGAGTTCTCGTGGTCCAGAATCTACAAAATTTTTGTTTGGAACATGAAATAGCTTGTATCCATAGAACATCTGGCGTAACATAGATAATAAAT
AAATAGGAGTTAATATCATTCCTATTGCCATTACAAAAGTAATTAGCATTTTTGGCATTAACATAAATTTAGGACTAGTAATTAGTCCAAAAAATACTAC
TAATTCTGCAACAAAACCGCTCATTCCCGGCAAGGCAAGAGAAGCCATTGAAAAGCTACTAAACATGGTAAAAATTTTTGGCATTGGGATAGATATTCCC
CCCAGTTCTTCGAGATAAACAAGACGCATTCTATCACAAGCCGTTCCCCGCCAAGAAAAAAAGTGTAGCACCGATAAATCCATGAGATAATATTTGTAAA
ATAGCTCCATTTAGTCCAATGTTGGTTATGGAACCAATTCCTATAATTATGAAACCCATGTGAGATACGGAGGAGTAGGCTATTCTTTTTTTGAAATTTC
GTTGACCAAGAGAAGTTGAAGCTGCATAGATTATTTGCACCGCTCCTATTATTACCAACCAAGGGGAAAATAGATAATGAGCATGCGGTAACAATTCCAT
ATTGACCCGAATCAATCCGGTATGCTCCCATCTTTAATAGAATTCCGGCTAAAAGCATACATGTACTGTAATGCGCTTCCCCATGGGTATCTGGTAACCA
CGTATGTAAAGGTATAATCGGCAATTTGACAGCATAAGCAATAAGGAAGCCAAAATACAGTAGTATTTCCAATGTTGTAGGGTATGATTGATTAATCAAT
CTTTCTAAATCTAATCCGGGTTCATTGGAACCATATAATCCCATACCCAGAACTCCAATTAAGAAAAAAATGGAACCGCCTGCAGTATACAAAATAAACT
TGGTAGCTGAATACAGACGCCTCTTTCCCCCCCACATGGATAAAAGTAAGTAACAGGAATTAATTCTAACTCCCACATGATAAAAAAAAGTAAAAGGTCT
CGTGAAGAAAATAATCCTATTTGACCGCTATACATTGCTAGCATCAGGAAATAGAATAATTGCGAATTCCGAGTAACCGGCCAAGCCGCTAAAGTAGCTA
AAGTAGTGATAAATCCTGTCAATAAAATAGATCCTAATGAAAGTCCATCGATTCCCAATCTCCAGTGGAAATCGAAAACATCTATCCATTTAGAATCCTC
CTTTAATTGGATTAAAGGATCCTCCAATTGGAAATGATAACAGAATGCATAAGTCATTAGAAGGAATTCTAATAAACAAATAGCTATAGTATACCACCTA
ACGATTTTATTTCCTTTATGAGGTAAAAAGAAAATTAATGAACCTGCAAATATCGGCAAAACAACAAGTATTGTTAACCAAGGAAAATAACTCATGATAA
AGTAATAAAGACAAGATACGTTTTGACCAGAAAAGCCCATGCTCGATTATTTCGAGCACAGGCTTCTTCGGTAAAGAGGAATCAGACGATTCAAGTGGAG
TTTTTTGTAACGTATCAATAAGATAGAGCCATGCTGCGGGTTGTTTCAGGCCCTAAATAAACGCGGACACTTAAAAAATCCGTTGGACAGGCGGATTCGC
ATCTCTTACAACCCACACAATCTTCGGTTCTCGGCGCGGAAGCAATTTGCTTGGCTTTACATCCATCCCAAGGTATCATTTCTAATACATCTGTTGGGCA
AGCTCGTACACATTGAGTGCATCCTATACATGTATCATAAATTTTTACAGAATGTGACATTGGATCTCTAAATTTTCCTTTTCAACATAAAAATTTTCGA
TCTGGTAAAAATGAAATTAGTACTATATAAATTAGATGTATTGTAGACACCAGACGAAGCAATGGTTTATCCAAACTTTAACAAATAATGCAATATATTT
CGTAATCTGTTTGTGAGAAAGCGTGAAAAGAGCCAAGAGACTTGAATTTAAGGCTTCAACAGTTATAATTATACGAATTCTACATACTAATTCGAATTAG
CCAATAAATTGGCTATCATCTTTTCAATATAAATTATTGCAATATTCAAATTGCAATATCAATGAATTGCAAAAATGCAATATTCAATAAGTAAAAAACA
ATACTCTGAAATAACCTACTCAAAAAAAGGATATTATTAAACACTAATAAGAAAATAAGATTAGATTTCTATTCATCTTAATGTTTCTTATTATTATATA
TGCCCCTTTGTT