Detailed information on CNT3017904


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521002Zea maysSetaria italica20.4774.7295.25337reverse complement
CNT30378671Zea maysArabidopsis thaliana9.1753.5598.01151forward
CNT30635645Zea maysCapsicum annuum25.8868.8289.44426reverse complement
CNT30569653Zea maysActinidia chinensis20.0549.1892.73330forward
CNT3067373Zea maysLeersia perrieri17.0192.7299.64280reverse complement
CNT30366518Zea maysSorghum bicolor18.9696.395.51312forward
CNT30595506Zea maysOryza meridionalis21.8132.6496.1359forward
CNT30420891Zea maysPapaver somniferum36.722.4990.23604forward
CNT30323793Zea maysAsparagus officinalis12.3364.2498.03203reverse complement
CNT30151602Zea maysBrachypodium distachyon22.4873.8599.46370forward
CNT30104648Zea maysOryza rufipogon29.1682.3395.62480forward
CNT30581589Zea maysEchinochloa crusgalli55.8394.1698.59919forward
CNT30495774Zea maysDigitaria exilis24.73102.7896.07407forward
CNT3040451Zea maysMarchantia polymorpha1130.8392.82181reverse complement

Expression of CNT3017904

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MLHRLCRPPSIPLSFGLATVLPRRSVSRVSWAPDPRSVA*

>peptide 2 (37 aa)
MGDHWSDASGETNSQGVTGGVYRARVHIHRGMLIRDY*

>peptide 3 (87 aa)
MLSHPSVGRDPESCLRFWRSFVDLRISPLHTKFHSPLSHSSELVSRAFRHFLATFTFNPIHRLRALYAQSFRRTLAPPVLPRLLARS*

>peptide 4 (31 aa)
MVKFLRKAQLRAGTQSSSSAGTSLGSSAISP*

>peptide 5 (32 aa)
NKTTKGLCGTSGTQKSWVIIGPMLRAKPIPRV*

>peptide 6 (31 aa)
MFPSCREQSELRQSFRIRSALQPCFPLSLPL*

Sequence

>CNT3017904
CAATAAGACCACCAAAGGCCTTTGTGGCACTAGTGGTACACAGAAGTCATGGGTGATCATTGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGA
CGGGCGGTGTGTACAGGGCCCGGGTACATATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTTCTACTTCATGTTCCCGAGTTGCAGAGAACAAT
CCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCTTACAGCCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCA
TGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCACTGGCAGTCCCTCGTGAGTGCGGCACGCACCTTTTTCTTTGTTTCGGAGCGGGGCGCGTA
CTATTACCACTACGTACCACACCACCGGGCGGCTGGCCTTCATGCCGAGTCTTCCTCCGCCGCCAACTCGACGTCGTCGTAACCAAGCCTAACCAAACCT
CCATGCTCACTGGTACTTTGACGTCACTATAGGTAGGTCTCCGTGGGTCTTGAGTTCGGCAAGACGACTTCGGTTCACACGTGAAAGTGCTTCGAGGCTC
CCAATGGTGAAATTCTTGCGGAAAGCACAGCTACGTGCTGGCACTCAATCAAGTAGTAGCGCTGGCACGTCACTCGGCTCCTCGGCTATTTCTCCTTAGG
CGCATGTCTCAGCAACACAAAACGAGGGTTTCGCTCGTTATAGGACTTGACCAAACATCTCACGACACGAGCTGACGACAGCCATGCAGCACCTGTATGA
AAGTAAGTACCATCCCGTTAAAGACAGGTTTTGTTGTTCATATGTCAAGGGCTGGTAAGGTTTTGCGCGTTGTATCGAATTAAACCACATGCTCCACCGC
TTGTGCAGGCCCCCGTCAATTCCTTTGAGTTTCGGTCTTGCGACCGTACTCCCCAGGCGGAGTGTTTCACGCGTTAGCTGGGCCCCTGATCCGCGTAGCG
TAGCGTAGACAGACCAAGGGCGAACACTCATCGTTTACGGCATGGACTACCAGGGTATCTAATCCTGTTCGCTCCCCATGCTTTCGCACCCCAGCGTCGG
TAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGTTCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCACTCAAGT
GAATTGGTTTCGAGAGCATTCCGCCACTTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACAC
TTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATTGATCGCGCACTCGACGAAAGAGCTTTACAA
GCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTG
TCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCGCTAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTACGCAGGCTCATCA
AACAGCGCTTTTGAGCTTTCTTCAGGATTTGGCCCGAACTGTTCGG